Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00992 TGTTTTCCATTTTCTCCAGTCGTCTCTTTGCGCCGTCCTTTCTCCGATCCCTCTCGAACGGCGAGCTGCGGAGCACCGCCAGGCCATTTTCCGCCTCCTCTCTCTTGTCGGGTGGATCATTTGAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTCACTAGGTTACCGATTAGAGATGCCATAAGAACAAGTATTTTGTCTAGGAGATGGAGATACAAATGGACCACTCTAACTCAACTTGTGTTTGATGATGATTGTGTTGCCATGTCCAACGATGGAATGTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCACGAAGGTCCAATTCATAAGTTCCATCTTTCTGCTACCTACTTACAGAATACTCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCGTCAGGGAATTGATTATTGAGTTGGGAGACGGCGAGTGGTTTCGGGTGCATTCTTGTCTTTTTAACTGTACCAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCTCCTCCTACTTTTAGGGGATTCTTATGTTTGAAGAGCCTAAAACTTCATCAAGTTCTAATTGCACCTGAAGACATCGAAAGTCTTATTTCTAATTGTCCGCTCTTGGAGAGTCTGGCGCTGTCGTATTTTGATAGTCTAGTGCTTAATATCTTTGCTCCAAATCTCAAGTACCTCTATCTTGAAGGCGAGTTCAGAGACATTTATCTTCAAAACACACCACTCTTGGTTGCAATTTCGGTTGCGTTATATATGAATGATGATACCGAGCCCTTTGGCGATATTTCTGATTGCAATTTTGAGAAATTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATATTTATTTCACCAAGTATCTGAGTATAGGTAATAGCGCAAGAGCTCTACCAGTGTCGTATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGCTTTGAAGATATGAATGAAATACTCGTTGTGCTTCGCTTGATTACCAGCTCTCCAAATTTAGAGGAGCTTCAAATTTCGGGCTCCTCAAACTCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTGGAACTGTACATTTGGTAACCTTAAAGTTGTGAAAATGACAGATATGTCTGGTGTACCACATGAGATGGAATTTATTAAATATTTGCTTAGAAATTCTCTGGTTCTTGAAACAATGAGTATCAGACCATGTGTCTATGTTACGGACCGACGATTGAATATGTTGATTGAATTGTTGAAATTTAGGAGAGCTTCATCTGAAGCAGAAATTTTATTCATTTAA 1344 40.55 CFPFSPVVSLRRPFSDPSRTASCGAPPGHFPPPLSCRVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGMYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGVRELIIELGDGEWFRVHSCLFNCTKLTLLELYRCELDPPPTFRGFLCLKSLKLHQVLIAPEDIESLISNCPLLESLALSYFDSLVLNIFAPNLKYLYLEGEFRDIYLQNTPLLVAISVALYMNDDTEPFGDISDCNFEKFLGGVPYLEKLTGHIYFTKYLSIGNSARALPVSYIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNSVAASEAPDLDFWENECPWNCTFGNLKVVKMTDMSGVPHEMEFIKYLLRNSLVLETMSIRPCVYVTDRRLNMLIELLKFRRASSEAEILFI 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10400190 10402236 - Carg21537-RA Car18g00992 166694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00992 447 Pfam F-box domain 41 73 IPR001810 GO:0005515
Car18g00992 447 Pfam FBD 376 415 IPR006566 -
Car18g00992 447 ProSiteProfiles F-box domain profile. 38 99 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00992 - - - csv:101208370 782.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00843 Car-Chr7:4466327 Car18g00992 Car-Chr18:10400190 9.96E-09 dispersed
Car14g01130 Car-Chr14:9969161 Car18g00992 Car-Chr18:10400190 8.46E-06 dispersed
Car14g01133 Car-Chr14:9986245 Car18g00992 Car-Chr18:10400190 2.25E-13 dispersed
Car05g00672 Car-Chr5:4212440 Car18g00992 Car-Chr18:10400190 6.23E-15 transposed
Car18g00992 Car-Chr18:10400190 Car04g01613 Car-Chr4:9319426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1028 . . . . . . . . . Cmo18g01091 . . . Car18g00992 Sed06g1833 . . Bhi07g01411 Tan04g0933 Cmetu10g0062 Lac13g0428 Hepe10g1843 . . . . . . . . . . . . . . . . Cme10g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00992 Car_Chr18 FPKM 4.04311 5.66195 9.12844 10.424183 8.137473 7.826365 7.456912 6.60683 5.840195 5.912409