Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00998 ATGGCGTCTTCCCCCACTCCCATCTCTCCACTATCTTTTCCCAATCGGAGATCAAAACCAAAACCAAAACCAAACAAACCGCCTCCTTCATTGCCTCCGCCGTGGAAACCCAGCCCCAAATCTATGCCCAAGGAGATTTACTTTAACCGCGATGGCTCTGCCTTGAAAAAGCTTCAGGTTACGCACTCGGACGAGGCCCTGGATTATCTTTCCTCGACAACTGATTTGTTTGGTTTTGTTGCGCAGGTCGGTGTTGATTTGGTGGCGGAGTTGGTCGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTGCTTCAAAGCAAATATGGTCCGCCTAAGATCGTCAACGACGGGGAAACTGTCCTCAAAGAGATTGAATTGGAAGACCGTTTAGAGAACGTTGGGGTGAAATTGGTAAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTAATTGCTGAGGGTATGAAGGTTATTTCATCTGGCATGAGTCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAATGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTTGCTGCAGTTAGTGCAGGGAATGATTATGCTGTGGGAAATATGATTTCAGATGCCTTACGTCAAGTTGGAAGGAAAGGAGTCGTCCAAATTGAAAAGGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGATTCTGGATATTTGTCTCCGTACTTTGTTACTGATAGACAGAAGATGATAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAGGAGAAGTATCCAATTGTGATCTTGGCAGAGGGCATTGAGCAGGCAGCTTTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTGTCAAGGCTCCTGCCTTCGGCGAACGCAAGAGTCACTACTTAGATGACATAGCGACCCTAACTGGAGCAACTGTGATCAGAGAAGATAGTGGACTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATAACGAAGGATTCCACACTAATAGTTACAGATGGGACTACTCGGGAAGCAGTTCAAAAAAGGGTTTTACAAATTCAAAAGCTTTTGGAGGTGCTGGAATCATCCCTTATCTATGCTGAGATATCCTACATTTCGAGAGATATACTATCATCTATTCTGCAGAATACTGAGGAAAAATTTCCAAAGAAGATTTTGAATGAGAGAATTGCTAGACTATCTGGGCGAATTGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAATTGAAGGATAAACAGTTAAGGATTGAGGATGCCTTGAATGCGTCAAAGGCTGCAATTGAAGAAGGTGTTGTCGTTGGTGGTGGTTGTTGTCTTTTAAGGCTGTCAACCAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGAAGAGCAGATGATTGGTGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAGACTAATTGCGAGAAACGCCGGAGTTAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTTTGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCGAAGGTCGTCAGATGTTGCTTGGAGCATGCCGCTTCTGTTGCGAAAACTTTCCTGACATCCGATGCTGTTGTAGTTGATATCAAGGAACCAGAATCCTTTCCAAGAAGAACGCCGTTGCCCATCTCAGGCATCAAACGAATGGGTCTTTAG 1914 43.57 MASSPTPISPLSFPNRRSKPKPKPNKPPPSLPPPWKPSPKSMPKEIYFNRDGSALKKLQVTHSDEALDYLSSTTDLFGFVAQVGVDLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQAALAPVIRNKLRGVLKAAAVKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLEVLESSLIYAEISYISRDILSSILQNTEEKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDMNFGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPESFPRRTPLPISGIKRMGL 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10423945 10429081 + Carg21531-RA Car18g00998 166700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00998 637 MobiDBLite consensus disorder prediction 1 43 - -
Car18g00998 637 MobiDBLite consensus disorder prediction 24 40 - -
Car18g00998 637 Pfam TCP-1/cpn60 chaperonin family 88 615 IPR002423 GO:0005524
Car18g00998 637 Coils Coil 477 497 - -
Car18g00998 637 ProSitePatterns Chaperonins cpn60 signature. 493 504 IPR018370 GO:0005524|GO:0006457
Car18g00998 637 Coils Coil 507 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00998 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 935.636
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00729 Car-Chr10:3804391 Car18g00998 Car-Chr18:10423945 0 dispersed
Car13g00320 Car-Chr13:5722571 Car18g00998 Car-Chr18:10423945 6.79E-144 dispersed
Car18g00998 Car-Chr18:10423945 Car20g00443 Car-Chr20:2508211 4.36E-161 dispersed
Car18g00998 Car-Chr18:10423945 Car11g00644 Car-Chr11:3548349 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00998 Car_Chr18 FPKM 6.653566 5.745605 8.510947 11.482009 1.416025 1.275218 1.66889 27.275131 25.837446 32.140636