Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00999 ATGGATATTGGCGGCGGAGATCAATTTAGAGTAGAAAGTAGCCCACAGGATTGTATGTCTTTGGATATGGCTGGTTGTTCTTCTTCCACTGCTCATGTGGTTGAGTCATTTAGCTCTACCATTTGGGAACAAACAGCTAATTCTCAAAACTTGGGACTCCTCGAAGAACATAACATATGTAGAACTTCAAACGACATAGCAATTAACAAGACCATTGGCTGCCCTGTTCCTTTGAGCAGTGACAATGACAAAACACTTGATATCAGCTGGAGCTTGTCCAATAATATGTTGAAAGGGGGAGGTTACCTTAATGCAATCCCGCCGAGCTTATCTCAACTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGTTCTCCTGGTTTAGTGGTGGAAATTTTGGTGATGTTACTGGCCATTTTGATATTCCTGAGCCTATGGACGTTTTTTCTAGAGGTATGGGAGTAGTAATGCCTGAGAGACAGGAGGATGTTCCTAGACGAAACGGGTTAGGTTCGGTATCTCGAGCCGGAGGACGATTCCAAGGAAATACGGTTAATAGTGAAGCTTCCAAGCCTGTTTCTTTGCATAATGCAGCACATGGAAGCCTTTTGAAATTGGACGATTGTTGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGCTTAGCGGTGGCGATGGTTCGGGTGAGCCATGCACGTTAGAGGTTGCAGGTAAGGAAGTTTCTGCTAAGGGCCTCGCTGCAAAGAAAAGGAAAAGGAGTGGACAGAAGGCTGAACTTGATCAAGTCAATGGACCTCTGCAACAAACTAGTGTTGCAGCCAAGGATAATACTGAATCTCAGCTAAAGGGAGATCAAAACCCGAGCTCGACCGCAAACAAGGGTACAGTAAAGCACGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTGCCTGGTTGCAGCAAGGTGACTGGGAAGGCAGTGATGCTCGATGAAATCATTAACTATGTTCAGTCTCTGCAACGACAAGTCGAGGTACGAAAATCTATTCTTCAATCTCGAGCTGGTCCCTCGTCGACATTAGGATTTCCTTCACACATGCCTGTTGCTTGTCCCCCGCCTCATGTCTCTCATCGTGGACTTATCCCAGTCAGTTTCCCTGCCATAGCGAGCTCCGAGACGTTAAGAAGAAGCACAATAAGTTCCCAGATGACGCTGAGGTCCGGGGTATATAAGGAGCCGACTCAGATAAAGAACATGTGGGATGGTGAACTCCATAACATTGTGCAGATGAGCTTTGGGATGTCCACTGCCCCTAATGGTTTAGCAGCTGAAGGTGCATTACTATTAGTACTATACGAGATACTTCGCCACGAACTATTTCTACTTCGTGGTTGTGCGAAACATACCATTACCGTACTTGAAGCTGTGATACTCGAGCTGGTAACCGAGGCAGAACATCAGCTCCCGAGTCCCGACAATCGCCAAGAACTCAATGACCTGATAGAGAAGCAGTTTCTGTTCTTGTTGGTTCGGATTCTAGGCGAGTGCTTGCCTTAG 1674 46.06 MDIGGGDQFRVESSPQDCMSLDMAGCSSSTAHVVESFSSTIWEQTANSQNLGLLEEHNICRTSNDIAINKTIGCPVPLSSDNDKTLDISWSLSNNMLKGGGYLNAIPPSLSQLPADSSFIERAARFSWFSGGNFGDVTGHFDIPEPMDVFSRGMGVVMPERQEDVPRRNGLGSVSRAGGRFQGNTVNSEASKPVSLHNAAHGSLLKLDDCCKHAVDGSANESDEAELSGGDGSGEPCTLEVAGKEVSAKGLAAKKRKRSGQKAELDQVNGPLQQTSVAAKDNTESQLKGDQNPSSTANKGTVKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEVRKSILQSRAGPSSTLGFPSHMPVACPPPHVSHRGLIPVSFPAIASSETLRRSTISSQMTLRSGVYKEPTQIKNMWDGELHNIVQMSFGMSTAPNGLAAEGALLLVLYEILRHELFLLRGCAKHTITVLEAVILELVTEAEHQLPSPDNRQELNDLIEKQFLFLLVRILGECLP 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10438430 10441744 + Carg21530-RA Car18g00999 166701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00999 557 MobiDBLite consensus disorder prediction 266 305 - -
Car18g00999 557 MobiDBLite consensus disorder prediction 163 190 - -
Car18g00999 557 Pfam Helix-loop-helix DNA-binding domain 331 379 IPR011598 GO:0046983
Car18g00999 557 MobiDBLite consensus disorder prediction 248 315 - -
Car18g00999 557 MobiDBLite consensus disorder prediction 249 263 - -
Car18g00999 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 378 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01621 Car18g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02113 Car-Chr4:17212997 Car18g00999 Car-Chr18:10438430 1.29E-102 dispersed
Car15g00796 Car-Chr15:4524480 Car18g00999 Car-Chr18:10438430 3.30E-106 dispersed
Car18g00999 Car-Chr18:10438430 Car14g01350 Car-Chr14:11392293 3.40E-44 dispersed
Car18g00999 Car-Chr18:10438430 Car04g01621 Car-Chr4:9365225 4.96E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5203 PF00010 HLH 6.20E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00999 - - bhj:120081983 663.299