Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01010 TCACAAAGTTCAAGCCACCTTCAAAAACTCTCTCAAGCTTCAAAACATGAAGGGAAGTTCATCTCGGGTTCCATACGAGCAAACCCCGAACCTCCTTTTCGTGCTAGAGCTTCGGTAAAATCAACATCTTCGGTGAAAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATAAGAAGTTCATCAAGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAATCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATTCTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCGTGTTGTTCATCTTCCATGAGATCTGTAGGTGTCGAATCTTCTACAGATCATACTGTAATTGAGCTCGTTGGCTGCGATCGACCTGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGGGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCGGTGATGCACGTGAGTGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAAAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGTAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGACGACTTCACCAGATGATGTTTGCAGATCGAGATTACGAGCGAGCGGACGACGAAAGGTTCCATGGAAAACAGAAGCCAAATGTGAATGTTGCCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAGGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGATATGCAATATGTTGTTTTTCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATGAATACATTTTACGTGCGCGATGCGTCGGGTTATCCTATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAGTCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAGATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCAAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1488 42.94 SQSSSHLQKLSQASKHEGKFISGSIRANPEPPFRARASVKSTSSVKEMNMSFSNDMGDEYKKFIKRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTVIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVSDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDERFHGKQKPNVNVANLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAMNTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGRSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10523842 10528271 + Carg17320-RA Car18g01010 166712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01010 495 MobiDBLite consensus disorder prediction 1 40 - -
Car18g01010 495 Pfam ACT domain 83 134 IPR002912 -
Car18g01010 495 Pfam ACT domain 391 436 IPR002912 -
Car18g01010 495 Pfam ACT domain 179 226 IPR002912 -
Car18g01010 495 ProSiteProfiles ACT domain profile. 84 164 IPR002912 -
Car18g01010 495 ProSiteProfiles ACT domain profile. 385 461 IPR002912 -
Car18g01010 495 MobiDBLite consensus disorder prediction 1 18 - -
Car18g01010 495 ProSiteProfiles ACT domain profile. 172 259 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01010 - - - jcu:105630587 728.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01745 Car18g01010 CCT
Car04g01745 Car18g01010 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01273 Car-Chr2:8535081 Car18g01010 Car-Chr18:10523842 1.09E-161 dispersed
Car06g00666 Car-Chr6:3967213 Car18g01010 Car-Chr18:10523842 2.88E-156 dispersed
Car12g00109 Car-Chr12:586406 Car18g01010 Car-Chr18:10523842 0 dispersed
Car15g01062 Car-Chr15:8359426 Car18g01010 Car-Chr18:10523842 4.56E-160 dispersed
Car17g01311 Car-Chr17:9861547 Car18g01010 Car-Chr18:10523842 6.82E-180 dispersed
Car18g01010 Car-Chr18:10523842 Car15g00076 Car-Chr15:465637 8.34E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01010 Car_Chr18 FPKM 2.333658 1.693528 2.437861 3.028463 3.626161 3.928371 3.818006 4.638961 3.736075 3.842019