Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01010 TCACAAAGTTCAAGCCACCTTCAAAAACTCTCTCAAGCTTCAAAACATGAAGGGAAGTTCATCTCGGGTTCCATACGAGCAAACCCCGAACCTCCTTTTCGTGCTAGAGCTTCGGTAAAATCAACATCTTCGGTGAAAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATAAGAAGTTCATCAAGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAATCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATTCTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCGTGTTGTTCATCTTCCATGAGATCTGTAGGTGTCGAATCTTCTACAGATCATACTGTAATTGAGCTCGTTGGCTGCGATCGACCTGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGGGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCGGTGATGCACGTGAGTGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAAAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGTAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGACGACTTCACCAGATGATGTTTGCAGATCGAGATTACGAGCGAGCGGACGACGAAAGGTTCCATGGAAAACAGAAGCCAAATGTGAATGTTGCCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAGGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGATATGCAATATGTTGTTTTTCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATGAATACATTTTACGTGCGCGATGCGTCGGGTTATCCTATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAGTCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAGATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCAAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1488 42.94 SQSSSHLQKLSQASKHEGKFISGSIRANPEPPFRARASVKSTSSVKEMNMSFSNDMGDEYKKFIKRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTVIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVSDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDERFHGKQKPNVNVANLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAMNTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGRSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10523842 10528271 + Carg17320-RA Car18g01010 166712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01010 495 MobiDBLite consensus disorder prediction 1 40 - -
Car18g01010 495 Pfam ACT domain 83 134 IPR002912 -
Car18g01010 495 Pfam ACT domain 391 436 IPR002912 -
Car18g01010 495 Pfam ACT domain 179 226 IPR002912 -
Car18g01010 495 ProSiteProfiles ACT domain profile. 84 164 IPR002912 -
Car18g01010 495 ProSiteProfiles ACT domain profile. 385 461 IPR002912 -
Car18g01010 495 MobiDBLite consensus disorder prediction 1 18 - -
Car18g01010 495 ProSiteProfiles ACT domain profile. 172 259 IPR002912 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01745 Car18g01010 CCT
Car04g01745 Car18g01010 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01273 Car-Chr2:8535081 Car18g01010 Car-Chr18:10523842 1.09E-161 dispersed
Car06g00666 Car-Chr6:3967213 Car18g01010 Car-Chr18:10523842 2.88E-156 dispersed
Car12g00109 Car-Chr12:586406 Car18g01010 Car-Chr18:10523842 0 dispersed
Car15g01062 Car-Chr15:8359426 Car18g01010 Car-Chr18:10523842 4.56E-160 dispersed
Car17g01311 Car-Chr17:9861547 Car18g01010 Car-Chr18:10523842 6.82E-180 dispersed
Car18g01010 Car-Chr18:10523842 Car15g00076 Car-Chr15:465637 8.34E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01010 - - jcu:105630587 728.398