Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01016 ATGGATCCCCCACCCTCCTACCGCAGTCGCAGACTCACCAACAAACCTCAGCTATACTCCACAGTTGTCATCCATTCCAATTCTGATTCAGACGCCGACAACAAACCTTCCGATCGGAGACTTCAGCGCCGACGAAGACCGCCGAGCGAAGGTCAAGACCTATACGCCACAATGGTCTATAAGGACGTTGATAAGGGCCACGAGGATGAGGATGACGATGATTCGTCTCTCCCACCTCTCCTCAAACGTCTTCCAAAGGATTTCGGGGGTGGAGCCCCAATTGACTACAACGACGACGAAGATTTTGGATTTGATCACGATACTGAAGATTTTGGTACGGTGATCGTCAAAACGGGAAGGAGTCGCCCTCTTAATCGTTCTTTGTCTTCATCAGTTTCGGCGAAGCCTCGAAGTTCGGCGTTGCCTTCCGTGAACTTTCAGACGGGGAGCTCCGGGACGAGATCAGGCGGTAGAGATGGTAGCGAGGAAGGCGATGTGAGCGAGGAAGATGATGGTGATGGGTATTCGACGTTCGTGGTGAAGCCCTCGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGACACCATTCTTCGAAGGAGCGTTGCTAGTCGTAGTGATACCAGGGATGGAGGCGGAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGCATGCAAGGAATGGGAGACTTAGGGTTTGGGAAGCAGAGGAAGGGGACTGGATCGCCGAAGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCCACGAGTTCAATTCCTGAAAGCATCACCAGGGAAGATCCAAATACCAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGAGATATTAAGACCTCTGAGCTTGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATCGAGATGTTGCAGCAGTGCAGTCATCCAAACGTTGTCCGCTATCTTGGGAGCTACCAAGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAAGAAGCACTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTAACTTATCTTCATTCGATTTTCAAAGTACATAGAGATATCAAGGGCGGCAATATTTTGTTAACCGAACAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCCCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATCGAAATGGCTGAGGGACTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGCGCATCAGCAATGTTGCCGAAGATTGAAAAGGCAAGGAAAATCAGGACTTTGTTGATGGCTCAGCAAGCTCGTAGTGTTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAAACTATGGAGATACTGTTCCTTCAAAACCTCAGAATGTTGGACTTCAGGTAGCAAATGAAATGTCATGGAGGAAGCAAGAGCAATCGGGTGTAGAAGCCGAAGGTACTTTTGGCACTATGATAGTCCATGATGGAGATGAAAATGATAAGGTGGCCTCTCGACTGGATACTGGCAATGCTGTAGCACCAACTGGTCCTTCAAGCAATGAGAGCCAATCCGTTGGTGTAGCTGGAGTCAAAATTGTGGACTCTAGTGTGGTGGATCGTACGGGAGGTATTGCTAGTAATAATCTTGATGGAAAATTAGATCCTGCCATTCCTGCATCTTCCCCCTCATTTTTGGGTATTCATGAGCTTAGCACGTTGGAAAATGAATCTGTCAGCCGGAAATCTTTTGCTTTGCAGGATAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCCATTGCTTTGTTATCTGACAATGTCCTCGGAGGCATGCAACAAGATAACAGGGGGACTGTTGCAGTGGAAACGCTTCAGGAACTCTTCACCGGTGATGGACAATCAAAGAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCATCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACCCTATTGAACCTTGCCCAGGCTCTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCGACTCAAGAACAACAAACCATCCAAAATCTTTGTGATACACTTAGAACTATCCTTCGATTGTAG 2532 47.51 MDPPPSYRSRRLTNKPQLYSTVVIHSNSDSDADNKPSDRRLQRRRRPPSEGQDLYATMVYKDVDKGHEDEDDDDSSLPPLLKRLPKDFGGGAPIDYNDDEDFGFDHDTEDFGTVIVKTGRSRPLNRSLSSSVSAKPRSSALPSVNFQTGSSGTRSGGRDGSEEGDVSEEDDGDGYSTFVVKPSARSRNRESVSDTILRRSVASRSDTRDGGGGLEGSTLGRAVASMQGMGDLGFGKQRKGTGSPKSEEGGGRMRSKVSTSSIPESITREDPNTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLLMAQQARSVPPDASGDGTIVAAKLNQNYGDTVPSKPQNVGLQVANEMSWRKQEQSGVEAEGTFGTMIVHDGDENDKVASRLDTGNAVAPTGPSSNESQSVGVAGVKIVDSSVVDRTGGIASNNLDGKLDPAIPASSPSFLGIHELSTLENESVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPSSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10579415 10589269 - Carg17314-RA Car18g01016 166718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01016 843 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Car18g01016 843 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01016 843 MobiDBLite consensus disorder prediction 24 268 - -
Car18g01016 843 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01016 843 MobiDBLite consensus disorder prediction 253 268 - -
Car18g01016 843 MobiDBLite consensus disorder prediction 31 50 - -
Car18g01016 843 MobiDBLite consensus disorder prediction 120 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01156 Car-Chr16:9849413 Car18g01016 Car-Chr18:10579415 2.44E-59 dispersed
Car18g01016 Car-Chr18:10579415 Car01g00231 Car-Chr1:1259071 3.42E-55 dispersed
Car18g01016 Car-Chr18:10579415 Car01g01040 Car-Chr1:9848189 3.39E-80 transposed
Car18g01016 Car-Chr18:10579415 Car09g00765 Car-Chr9:4506737 6.83E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89541 PF00069 Pkinase 7.70E-68 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01016 - - csv:101209775 1343.18