Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01019 ATGTGGAAAAGAGCTGTGTGTTCGATTCCTCGCAGGTTGTTTTCTTCTACACCAGAAGTCTCATCGCTCTACTCCTTCCTCCAACCCTCCCTCTTCGCCCCAAAGCGAGCACCATTTTCGCCATCTCAAGAATCCACCGACCTCCGTCAGAATCAAACTCCTCAAATTTTGACTACAGACCGTGTCGCCGCCGTAGAAACGACGCTCCACAAGTCCCTTCTCACCAGCGACACTGACGAGGCATGGAAATCCTTCAAACTGCTCACGAAAAGCTCCGTTTTCCCATGTAAGTCTCTCACTAATTCACTTATTGCCCACTTATCCTCAATCGGGGGCGTTCATAATCTGAAAAGAGCCTTTGCATCTGCGGTGTTTGTTATTGAAAAGAAACCCGAATTATTGGATTTTGGATCTGTCAAAACCCTATTAGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTGTTTCTTTGATTAAATGCATGTTGAGGAATCGATGTTTTGTGCCTTTTGAATTCTGGGGCAATGAACTTGTTAGTATTTGCAGGCAGAGTGGTAGTTTGATTCCCTTTTTAAGAGTGTTTGAAGAGATTTGTAGGATTGTTTTAAATGAGAGGTTAGATTCTATGAAACCAGATCTCAATGCGTGTAATGCAGCACTTGAGGGGTGTTGCCATGAGCTTGAATCTGTAACAGATGCCGAGCACGTCGTTGAAACGATGTCGCTTTTGAATCTTCGGCCTGATGAAGTTACTTTTGGTACTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATCGAGTTAAAACGTTTGATGGGAAGTTTTGGTTTTGCATCTAAGAGTCTGTTCTTTAATAATTTGGTAAGTGGATACGTTAATTCGGGCGACTTAGCTGCTGTTTCGAAGACTATGTTGGATGGTTTGAAAGATGAATGTGGAGAACATGTAAGATTTGAGGAAAAAACGTATTTGGAAGTGGTTAAGGCTTTTGTTCAGAGTGGAAATCTGAAGGAATTATCTTCATTGATTGTTGATGCTCAGAATTTAGAGTCTTCAACGGACGTTGATGGATCGATCGGATTCGGTATCATTAATGCTTGTGTTAATATTGGATGGTTAGATAATGTGCACGCCATTCTGAAAGAAATCAATTCCCAGGGAGTTTCTGTAGGCCTTGGAGTCTATATGCCGATCCTGAAGGCGTACCAGAAGGAGCGTCGAACAGCTGAAGCCACCCAATTAATCATGGATGTTAGCAGTTCCGGGCTACAGTTGGATGCAGAAACTTTTGATGCTCTTATAGAAGCATCGATGTCGAATCAAGATTTTCAGTCGGCTTTCGCTTTGTTCAGGAAAATGAGGGAAACGAGAAAATCCAACACGAACGCTAGCTATCTAACTATTATGACTGGCTTAATGGAGAGCCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAGGATCCTCTCGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCGAGAAGAACGTTTCGAAGAATGAAGTTTCTGCAGTTTGAACCGAATGAACAAACGTTCTTGTCTCTAATTAATGGCTATGTGTCGGGAGAGAGATATTTCTGTGTTTTGATGCTGTGGAACGAACTTAAGTGGAAGATTACTGCAAATGGGGAGAGAGGTTTCAAACTCGATAGCAACTTGGTTGACGCGTTCTTGTATGCTTTGGTTAAGGGAGGTTTCTTCGACGCCGTGATGCAAGTTGTCGAAAAAACTAAGGATACGAAGACCTTCGTCGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGCAATCACTTATTGATTTCAAGAACTGGGTTGGTTTGAATGCTTGA 1968 42.58 MWKRAVCSIPRRLFSSTPEVSSLYSFLQPSLFAPKRAPFSPSQESTDLRQNQTPQILTTDRVAAVETTLHKSLLTSDTDEAWKSFKLLTKSSVFPCKSLTNSLIAHLSSIGGVHNLKRAFASAVFVIEKKPELLDFGSVKTLLASMKCANTAAPAVSLIKCMLRNRCFVPFEFWGNELVSICRQSGSLIPFLRVFEEICRIVLNERLDSMKPDLNACNAALEGCCHELESVTDAEHVVETMSLLNLRPDEVTFGTLAYLYALKGLEQKIIELKRLMGSFGFASKSLFFNNLVSGYVNSGDLAAVSKTMLDGLKDECGEHVRFEEKTYLEVVKAFVQSGNLKELSSLIVDAQNLESSTDVDGSIGFGIINACVNIGWLDNVHAILKEINSQGVSVGLGVYMPILKAYQKERRTAEATQLIMDVSSSGLQLDAETFDALIEASMSNQDFQSAFALFRKMRETRKSNTNASYLTIMTGLMESHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSGERYFCVLMLWNELKWKITANGERGFKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKTFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMQSLIDFKNWVGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10599956 10601923 - Carg17311-RA Car18g01019 166721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01019 655 Pfam Pentatricopeptide repeat domain 418 470 IPR002885 -
Car18g01019 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Car18g01019 655 Pfam PPR repeat family 505 548 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00300 Car-Chr8:1929940 Car18g01019 Car-Chr18:10599956 7.94E-07 dispersed
Car18g01019 Car-Chr18:10599956 Car19g00470 Car-Chr19:6359509 1.98E-20 dispersed
Car18g01019 Car-Chr18:10599956 Car03g00384 Car-Chr3:4615084 4.42E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01019 - - csv:101212045 1101.66