Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01026 ATGTCGATTTTGTTTCCATTTCGGGATCTGGTTGATCTCGCTGCCGACTGTTTGGAAACTGAATTTCTGACCATTGATCGCGTTGGATTGATCGGTTTGAAGTTTGGTTTGAAGAATTCTTGTGCAATTGGGGTTATGCTTTATGCTCTGCTTCGAGATTTAAACAGAAGGCGCTTCCCATTTAGAGTGGTTCTGAACTGGATTATTGAAGGTACTTCAGAAATATTGGACATGAGAAGCTCCTGGGTTAATAAAATATCTGTAATCTTGGGCTCCAAACCACCATTCAACTGGTTAATCTTGTGTCTCATCAGCGTGCTTGCATTAATTGTAGTTCTAGGAACGTCTACTTCAAATGTCTTTGATTCAGTTTCTACCACGCCAGTGTCTGACATTTATACTAGCTATAGAAGGCAAAAAGAAAGGGCCGCAATTGATTTGTTTGACTTAAAGTCTCTTTCATTAGCCACGGGTCGAGTCAAAGAGTTTGGTCTTTGTGGAAAAGAAAGAGAAAACCATGTGCCATGTTACAATGTTACAGCAAATATGTTAGCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAAGTGTCTAGAACAGCAGAGCGTTGCCTGGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGTTGGCCTGTTGGTAGGGATATAATATGGAGTGGGAATTTGAAGGTAACAAAAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTTCTTTTCACTCGGAGGATGGTGATGGAGTCAAAGAGTATTCCTTTCAAATCGCAGAGATGATTGGTTTAGGCACTGACTCTGAATTTCTTCAGGCTGGTGTACGCTCGATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCATTTAACATCAATGAATGTAATGGTTATGTGCATTGCGACCTATGAGGCGACTGGCAGTCAAGTTCAAATGGCTCTAGAGAGAGGCCTTCCAGCGATGCTTGGCAACTTTATTACAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAATGTGAAATCTCTTGGAACGATAAAGGTGGGATATTCCTTATTGAAGCCGACCGGTTGCTAAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAAGCAAGGCAGTCGGTGGTTCATTGTCTTCCAAGAAGATAAGCATTTTGACACCACTGGAAGAGATTACCCGAAGATTATGTTGGACTTTTTTAGCTCAGCAGTATGAAACTTATATTTGGCAGAAAACTACAGATCCTCGTTGCTATTTATCTGGCAAGCAGGAAATTGTACCACTTTGTAAAGAAGGGCATGATACTCCATCATATTATCAACCTCTGGTACCATGCCTAAGTAGTACTACCAGCAAGCGGTGGATTCCAATCCAGAACAGATCTTCCAGTTCTCGTTTGAGTTCAGCTGAACTTGAAGTTCATGGAAAGTATTCTTCCTTAATGGTTCTGTATTGCGTTCAATCAGATGACTACGCTGATGACTTACAAATTTGGCGAACGGCTTTGAAAAACTATTGGTCCTTGCTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTACCTCCATTTAACATGATACGCAATGTGATGGACATGAATGCTCATTATGGGGGTTTAAATGCTGCGTTTGTGGAGCAAAAGAAAACGGTTTGGGTCATGAATGTTGTGCCTGTTGGATCTCCTAATACGCTTCCCCTCATACTTGATCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTCCATGCAAATGGGCTCCTCTCACAGCTACTTTCAAGTAGGTGCAGCATGCTTGAATTTTTAGTCGAGATGGATCGTATACTGCGCCCTGAGGGATGGGTTATTCTAAATGACAAAGTGGGACCGATAGAGCAGGCGCGAATGCTTGTTACACATATTCGTTGGGAGGCAAGGGTGATCGACTTTCAGAATGGCAGCGACCAAAGGCTCCTTGTTTGCCAGAAACCATTCGTGAAAAAATGA 2115 42.41 MSILFPFRDLVDLAADCLETEFLTIDRVGLIGLKFGLKNSCAIGVMLYALLRDLNRRRFPFRVVLNWIIEGTSEILDMRSSWVNKISVILGSKPPFNWLILCLISVLALIVVLGTSTSNVFDSVSTTPVSDIYTSYRRQKERAAIDLFDLKSLSLATGRVKEFGLCGKERENHVPCYNVTANMLAGYKEGEEYDRHCEVSRTAERCLVRPPKDYKIPLSWPVGRDIIWSGNLKVTKDQLLSSGSPTKRLMLLEENQISFHSEDGDGVKEYSFQIAEMIGLGTDSEFLQAGVRSILDIGCGFGSFGAHLTSMNVMVMCIATYEATGSQVQMALERGLPAMLGNFITKQLPYPSLSFDMVHCAQCEISWNDKGGIFLIEADRLLRPGGYFVLTSPTSKAVGGSLSSKKISILTPLEEITRRLCWTFLAQQYETYIWQKTTDPRCYLSGKQEIVPLCKEGHDTPSYYQPLVPCLSSTTSKRWIPIQNRSSSSRLSSAELEVHGKYSSLMVLYCVQSDDYADDLQIWRTALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEQKKTVWVMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCSMLEFLVEMDRILRPEGWVILNDKVGPIEQARMLVTHIRWEARVIDFQNGSDQRLLVCQKPFVKK 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10626536 10630932 - Carg17304-RA Car18g01026 166728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01026 704 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 172 699 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01026 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101213009 1224.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01228 Car-Chr1:11270473 Car18g01026 Car-Chr18:10626536 0 dispersed
Car05g00451 Car-Chr5:2576768 Car18g01026 Car-Chr18:10626536 0 dispersed
Car09g00492 Car-Chr9:2738604 Car18g01026 Car-Chr18:10626536 0 dispersed
Car18g01026 Car-Chr18:10626536 Car08g00955 Car-Chr8:6380417 3.02E-103 dispersed
Car04g01733 Car-Chr4:9925664 Car18g01026 Car-Chr18:10626536 0 transposed
Car18g01026 Car-Chr18:10626536 Car04g01732 Car-Chr4:9924700 6.35E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g66 . . Bda01g02130 . . . Bma14g01641 . . Cmo18g01134 . Cma18g01112 . Car18g01026 Sed06g1770 . . Bhi07g01503 Tan04g1016 Cmetu03g1484 . . . . . . . . . . . . . . . . Csa05g02505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01026 Car_Chr18 FPKM 1.359712 3.331018 3.568395 2.907034 17.286556 17.58321 19.710989 54.921127 48.677097 45.76841