Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01030 ATGGATCAGTGGGTGACAACAGATGAGGACATCGATAGACAACAACGAGGCAGTAGAACACAAACATACTTGTTTCCCCTGAAATCCCAATCTTCCAGAGAGAAAACAACGGCGGGCTGGTTGGGAAGGCAATTTTTGCAGCAAATGAGTCGAGGGAATGAATTTTCCGACGACGAAATAGAGCGTGTAACCGCCGTAGCCGCCGCCGCCTACGCAATTCATTCCATTCAGAATTCAGAAATCGCGAGACGCAGAAAGAATGCCGATTATCCTGAAACGTCGTCGTTCCCAAAGTTTACACACCTCAAGGAAGACAATCGCCCCCCCACTCCTCGTCCGGCGCCGGAATCTGCTAAGCTTTCCCGGCGGTTAATAGATAAAGATCATCTGCAAGATCCTGAACAAAGCCAACGAAGGAATGTGTCAGTGACCCACGAACAACCAAAACGGAAACCAACGGAAAACACAACCGATCCCGGTAGCCGTCCATACTTCAAAGAGACAGCTTTTTCCGGCAACAAACCAGACACCTCCGGCAGCCGAAGAACAGACCCAGAGAAACCATCAAACATCTCCGGCAGCCGAAGAATAGAAACAGAGAAACCAGCAGGCATCTCCGGCAGCCGAAGAACAGAACCAGAGAAACCATCAAACATCTCCGGCAGCCGAAGAACAGAAGCAGAGAAACCAGCGGTAGTCCCAAGACCTCCAACTCCATTTAATCGGCCGACCGACCCACAAAAGCCACTCCCAACCCAAACCAGACCTTATGATTCAAGAGAAACAAAAGCAGATCAGTGGGAAAAGGCTGAGATGGCTAAAATCAACGAGAGATTCCATAAAGTGATCGAGACAGTATCTTACTGGGAAAGAAAGAAGAGGGACAAAGCCAGGAGGAAATACGATGAATCACAGGCTGCGGGCGTGAAGAGGTCGAAGAGGGAAAAGGGAATAAAGAAATTCGAGGAAGACATGGATTTTATAAAGCAAATTGCAGAAGAAGCAAGAGCCAAAGCCGATCAAAAGCGAAGAAATGATATTCTTAAAGCTAATCAAAAAGCAGATATTATCAGACAAACAGGGGACCTCCCTGTTTCTTGTTCCTGCTGCTGA 1113 47.8 MDQWVTTDEDIDRQQRGSRTQTYLFPLKSQSSREKTTAGWLGRQFLQQMSRGNEFSDDEIERVTAVAAAAYAIHSIQNSEIARRRKNADYPETSSFPKFTHLKEDNRPPTPRPAPESAKLSRRLIDKDHLQDPEQSQRRNVSVTHEQPKRKPTENTTDPGSRPYFKETAFSGNKPDTSGSRRTDPEKPSNISGSRRIETEKPAGISGSRRTEPEKPSNISGSRRTEAEKPAVVPRPPTPFNRPTDPQKPLPTQTRPYDSRETKADQWEKAEMAKINERFHKVIETVSYWERKKRDKARRKYDESQAAGVKRSKREKGIKKFEEDMDFIKQIAEEARAKADQKRRNDILKANQKADIIRQTGDLPVSCSCC 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10653187 10657731 + Carg17299-RA Car18g01030 166732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01030 370 Coils Coil 318 345 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 232 250 - -
Car18g01030 370 Pfam Remorin, C-terminal region 259 365 IPR005516 -
Car18g01030 370 MobiDBLite consensus disorder prediction 294 315 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 119 135 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 79 266 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01030 Car-Chr18:10653187 Car04g00007 Car-Chr4:27869 5.89E-08 dispersed
Car01g00752 Car-Chr1:4560326 Car18g01030 Car-Chr18:10653187 1.71E-10 wgd
Car13g00925 Car-Chr13:9514667 Car18g01030 Car-Chr18:10653187 2.19E-13 wgd
Car18g01030 Car-Chr18:10653187 Car04g01727 Car-Chr4:9902349 3.37E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01030 - - cpep:111802427 674.085