Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01030 ATGGATCAGTGGGTGACAACAGATGAGGACATCGATAGACAACAACGAGGCAGTAGAACACAAACATACTTGTTTCCCCTGAAATCCCAATCTTCCAGAGAGAAAACAACGGCGGGCTGGTTGGGAAGGCAATTTTTGCAGCAAATGAGTCGAGGGAATGAATTTTCCGACGACGAAATAGAGCGTGTAACCGCCGTAGCCGCCGCCGCCTACGCAATTCATTCCATTCAGAATTCAGAAATCGCGAGACGCAGAAAGAATGCCGATTATCCTGAAACGTCGTCGTTCCCAAAGTTTACACACCTCAAGGAAGACAATCGCCCCCCCACTCCTCGTCCGGCGCCGGAATCTGCTAAGCTTTCCCGGCGGTTAATAGATAAAGATCATCTGCAAGATCCTGAACAAAGCCAACGAAGGAATGTGTCAGTGACCCACGAACAACCAAAACGGAAACCAACGGAAAACACAACCGATCCCGGTAGCCGTCCATACTTCAAAGAGACAGCTTTTTCCGGCAACAAACCAGACACCTCCGGCAGCCGAAGAACAGACCCAGAGAAACCATCAAACATCTCCGGCAGCCGAAGAATAGAAACAGAGAAACCAGCAGGCATCTCCGGCAGCCGAAGAACAGAACCAGAGAAACCATCAAACATCTCCGGCAGCCGAAGAACAGAAGCAGAGAAACCAGCGGTAGTCCCAAGACCTCCAACTCCATTTAATCGGCCGACCGACCCACAAAAGCCACTCCCAACCCAAACCAGACCTTATGATTCAAGAGAAACAAAAGCAGATCAGTGGGAAAAGGCTGAGATGGCTAAAATCAACGAGAGATTCCATAAAGTGATCGAGACAGTATCTTACTGGGAAAGAAAGAAGAGGGACAAAGCCAGGAGGAAATACGATGAATCACAGGCTGCGGGCGTGAAGAGGTCGAAGAGGGAAAAGGGAATAAAGAAATTCGAGGAAGACATGGATTTTATAAAGCAAATTGCAGAAGAAGCAAGAGCCAAAGCCGATCAAAAGCGAAGAAATGATATTCTTAAAGCTAATCAAAAAGCAGATATTATCAGACAAACAGGGGACCTCCCTGTTTCTTGTTCCTGCTGCTGA 1113 47.8 MDQWVTTDEDIDRQQRGSRTQTYLFPLKSQSSREKTTAGWLGRQFLQQMSRGNEFSDDEIERVTAVAAAAYAIHSIQNSEIARRRKNADYPETSSFPKFTHLKEDNRPPTPRPAPESAKLSRRLIDKDHLQDPEQSQRRNVSVTHEQPKRKPTENTTDPGSRPYFKETAFSGNKPDTSGSRRTDPEKPSNISGSRRIETEKPAGISGSRRTEPEKPSNISGSRRTEAEKPAVVPRPPTPFNRPTDPQKPLPTQTRPYDSRETKADQWEKAEMAKINERFHKVIETVSYWERKKRDKARRKYDESQAAGVKRSKREKGIKKFEEDMDFIKQIAEEARAKADQKRRNDILKANQKADIIRQTGDLPVSCSCC 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10653187 10657731 + Carg17299-RA Car18g01030 166732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01030 370 Coils Coil 318 345 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 232 250 - -
Car18g01030 370 Pfam Remorin, C-terminal region 259 365 IPR005516 -
Car18g01030 370 MobiDBLite consensus disorder prediction 294 315 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 119 135 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 79 266 - -
Car18g01030 370 MobiDBLite consensus disorder prediction 179 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01030 - - - cpep:111802427 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01030 Car-Chr18:10653187 Car04g00007 Car-Chr4:27869 5.89E-08 dispersed
Car01g00752 Car-Chr1:4560326 Car18g01030 Car-Chr18:10653187 1.71E-10 wgd
Car13g00925 Car-Chr13:9514667 Car18g01030 Car-Chr18:10653187 2.19E-13 wgd
Car18g01030 Car-Chr18:10653187 Car04g01727 Car-Chr4:9902349 3.37E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g71 . . Bda01g02133 . . . . . . . . . . Car18g01030 . Cpe09g00209 . . . . . . . . . . . . . . . . Cone19ag0916 . Cone9ag0555 . . . . . . . . . Bpe02g02322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009173 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01030 Car_Chr18 FPKM 14.413516 16.659006 14.267531 15.138535 14.612016 16.381651 15.727195 24.340414 23.694361 25.240137