Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01033 ATGGAGAAGGCTTTATCCAAGGTGAGCAGCTTGAAGGTTGGGAGCTTGTGGGTTTCAAAGAAAGCCAAGGAGGAAATCGCTAACATCACCGACGATTTCCATACTTTTTCAAGCACTGTTGAAGAGAAGGCAAAGTGGATTTTCAACAAGCTAAAAGGAAAGCCATTGAAGAGCTTACCAGATTTACTTCGCGAGTACAACTTACCACCCGGCCTCTTTCCTCAGAACATAACCTGCTACGAATTTGATGAATCCAAGTCGAAGCTGATCGTCTACTTACCATCGGTTTGCGAGATAAGCTTCAAGGATTCGTCTGTAATCCGATATGCGACACGGGTTAAAGGAACTCTTCAGAGAGGGAAGCTCACAGGCATTGAAGGAATGAAGACAAAGGTCCTAGTGTGGGTGAAAGTGACAAGCGTGACGGTTGAGGGCTACAAATCTGATAAGGTATGGTTCACTGCAGGAGTGAAGAAGTCGAGATCGAAAGATGCCTATGATAAGCCCCGTGATGGCGTTAGGGTAGAAGCATTCTGA 537 45.62 MEKALSKVSSLKVGSLWVSKKAKEEIANITDDFHTFSSTVEEKAKWIFNKLKGKPLKSLPDLLREYNLPPGLFPQNITCYEFDESKSKLIVYLPSVCEISFKDSSVIRYATRVKGTLQRGKLTGIEGMKTKVLVWVKVTSVTVEGYKSDKVWFTAGVKKSRSKDAYDKPRDGVRVEAF 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10672726 10675150 + Carg17297-RA Car18g01033 166735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01033 178 Pfam Protein of unknown function, DUF538 61 166 IPR007493 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01033 - - - csv:101214933 310.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01724 Car18g01033 CCT
Car04g01724 Car18g01033 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01033 Car-Chr18:10672726 Car08g00241 Car-Chr8:1518265 2.51E-14 dispersed
Car03g00291 Car-Chr3:4021695 Car18g01033 Car-Chr18:10672726 2.58E-59 transposed
Car01g00439 Car-Chr1:2510984 Car18g01033 Car-Chr18:10672726 1.05E-10 wgd
Car18g01033 Car-Chr18:10672726 Car04g01724 Car-Chr4:9880848 6.28E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g988 Blo01g00443 . Bda01g02137 . . . . . Cmo04g01768 Cmo18g01142 . Cma18g01121 . Car18g01033 Sed06g1493 Cpe09g00207 Cpe01g01493 Bhi07g01520 Tan04g1033 Cmetu10g0314 Lac13g0354 Hepe10g1778 . . Cla05g02411 Cam05g2589 Cec05g2621 Cco05g2660 Clacu05g2590 Cmu05g2444 . . . . . Lsi04g00383 Csa05g02493 Chy10g01041 Cme10g00378 . . . . . Bpe02g02326 Bma01g00113 . . . . Cma04g01687 . Car04g01724 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002962 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01033 Car_Chr18 FPKM 41.890728 39.248161 35.366074 36.155125 31.093073 34.03735 33.792343 28.476492 26.57202 29.653383