Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01034 ATGGCGATTCCCGGAGATCCAAGGGCATCTGCAACACCAGGTCTTGTCATCCACGGCATCCTTCGACCTCCCTTCATCCTCTTAAGGGTAAGCTGGCAAATTGACGAGACACTGCATTCTGGCTTTCTTCTCTCTGTCTGCTGCCTCAAATATCCCGAACCAGCCATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTCTAATTCTAATTTCAATGAAAACTTACCAGATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTCGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG 675 49.33 MAIPGDPRASATPGLVIHGILRPPFILLRVSWQIDETLHSGFLLSVCCLKYPEPAMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFLILISMKTYQISLLTDSGNTKDDLRLPSDESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10675800 10685209 + Carg17296-RA Car18g01034 166736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01034 224 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 105 112 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Car18g01034 224 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 140 219 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00295 Car-Chr5:1630760 Car18g01034 Car-Chr18:10675800 4.30E-104 dispersed
Car09g00361 Car-Chr9:1964282 Car18g01034 Car-Chr18:10675800 1.07E-107 dispersed
Car10g00432 Car-Chr10:2154764 Car18g01034 Car-Chr18:10675800 1.21E-58 dispersed
Car18g01034 Car-Chr18:10675800 Car04g01724 Car-Chr4:9880848 1.39E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01034 K03263 K02180 mnt:21396395 307.375