Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01035 ATGGGTGACGATGAAGATAAGCTGCCACCGTCGTCGGTGCCGTCGCCGTTGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTCCCGCCACGGACCTCTATGGAGTCGCTCTTAAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCAGGGCCCATGACCCTTGTCTCGAGCTTCTTCTCCGATTCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGCGCTATGACGTCGCCGGTGGCTGTTCCTCCGACGGCGTCCGAGCTCAAGGACTCTGCTGGTCTGCCCGATTCTCCGGGGCTTTTCTCGCCTGATCAGGGAACTTTTGGATTGACCCATCAGCAGGCTTTGGCTCAGGTTACCATGCAGGCTGTAGAAGCCTATTCTCATAAGCAAATACAAGCACACTCAGTAGCAGGCTCTGCAGCCTCCTCAAAGCTTTTGACCGTATTTCCGAGCGAGAAGGCTAAAGATCAGCCAGTGCCACTTCAATTGCTGAACTCTGCTGTCGTGTCGAAGGAGTCGTCCGATATCTCTCAATCCGATCAGAGATCGGTATCTTCTTCGTGTAATGTCGATAGGCCTGCTGATGATGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGTACCCGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGCCACGTTACTGAAATTATTTATAAGGGTGAACACAACCACGAACGACCTCAACCGAACAAGCGTGCAAAGGATGTTGGAAATTCTAATGGATATTCAAGTGTTCATGGAAACACTGACCTATATTCTCAAGTAAAGAGTGGATATTTGAATAAGTTGAATGAGCAGTCAGCTGTGTCTTCCGTTGTGAAGAAGGATCGAGAATCGAACCTCGTTACACATGGACAGTCGTTGGATGCTAGTGACAGTGAGGGAGGGGGTGAGGTAGAAACTGGACCGAATAGAAACGATGAAGACGAACCGGATGCCAAGAGACGGAACACCGAGGCTCGGATCGAGCCAGTGTCTTCTCATAGGACGCTCACGGAATCCCGAATCATTGTGCAGACTACAAGTGAAGTCGATTTGTTGGACGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGCAACCCTTACCCCAGGAGCTATTACAAATGCACGAGTCACGGATGCAATGTTCGTAAACACGTCGAGAGAGCTTCAACAGACCAGAAAGCTGTGATAACGACGTACGAGGGCAAACACAATCACGACGTTCCAGCCGGTAAAATCAGCAGCCACGGTACAGCCAACAGTAACGTTCCTCGCCTAAAATCACAAAATATAGGTACTGAGAAAGACTCC 1398 50.07 MGDDEDKLPPSSVPSPLKSKAFPLRPTINLPPRTSMESLLSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMTSPVAVPPTASELKDSAGLPDSPGLFSPDQGTFGLTHQQALAQVTMQAVEAYSHKQIQAHSVAGSAASSKLLTVFPSEKAKDQPVPLQLLNSAVVSKESSDISQSDQRSVSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSLEGHVTEIIYKGEHNHERPQPNKRAKDVGNSNGYSSVHGNTDLYSQVKSGYLNKLNEQSAVSSVVKKDRESNLVTHGQSLDASDSEGGGEVETGPNRNDEDEPDAKRRNTEARIEPVSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTSHGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHGTANSNVPRLKSQNIGTEKDS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10686288 10690046 + Carg17295-RA Car18g01035 166737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01035 466 MobiDBLite consensus disorder prediction 249 280 - -
Car18g01035 466 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g01035 466 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g01035 466 MobiDBLite consensus disorder prediction 1 36 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 302 358 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 264 280 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 443 459 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 86 110 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 433 466 - -
Car18g01035 466 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g01035 466 MobiDBLite consensus disorder prediction 249 263 - -
Car18g01035 466 MobiDBLite consensus disorder prediction 332 358 - -
Car18g01035 466 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00952 Car-Chr16:7891861 Car18g01035 Car-Chr18:10686288 5.72E-85 dispersed
Car18g01035 Car-Chr18:10686288 Car01g00644 Car-Chr1:3796468 5.14E-80 dispersed
Car15g00249 Car-Chr15:1369138 Car18g01035 Car-Chr18:10686288 1.69E-139 wgd
Car18g01035 Car-Chr18:10686288 Car04g01723 Car-Chr4:9876573 0 wgd
Car18g01035 Car-Chr18:10686288 Car04g02685 Car-Chr4:20835857 4.79E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5206 PF03106 WRKY 5.50E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01035 - - cmo:103489160 690.263