Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01039 ATGTTCAGTCATATCACATATTTTCTTGCATTCTCTGTGAATCTTCAATGTTATTGCTATCCTTTTATTACATTTCTATATTTTATCTTTGACTCTCGTCTTAGTACTCTACAGGGCCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCCTCTGAACTAGATTTTTCTAACTCAGCTATTATCGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTACTGGCGTGGAACCCCTGTAGCTGTCAAACGTATCCTTCCATCACTATCTGATGATAGACTTGTGATTCAGGATTTTCGACATGAGGTTAATCTCTTGGTGAAACTACGCCACCCGAACATAGTCCAATTCCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAGTCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCACTCAGTCCTTCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAACCAAATGTTATAATTCACCGTGACCTGAAACCGAGGAACGTTCTGTTGGTTAATTCCGGAGCCGACCATCTAAAAGTTGGTGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACACGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCTCCTGAAGTATTTAAGCACAGAAAATACGATAAGAAGGTGGACGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCACCACTGGCAAATTACGAGCCTTATGAAGCTGCCAAATATGTGGCTGAAGGTCATCGACCGATGTTCCGTTCGAAAGGATACCTTCCCGTTCTAAGAGATTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCTTGGAGATTCTCAAAAGACTTGAAAGGGTGAAGGAAAATCTTCCCACTGATCATTCCTGGAATTTGTTTAATGCATAA 1038 41.81 MFSHITYFLAFSVNLQCYCYPFITFLYFIFDSRLSTLQGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLVTEYLRGGDLHQYLKDKGSLSPSTAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRSKGYLPVLRDLTEECWASDMNKRPSFLEILKRLERVKENLPTDHSWNLFNA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10720494 10724516 + Carg17291-RA Car18g01039 166741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01039 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Car18g01039 345 ProSiteProfiles Protein kinase domain profile. 69 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01039 345 ProSitePatterns Protein kinases ATP-binding region signature. 75 96 IPR017441 GO:0005524
Car18g01039 345 Pfam Protein tyrosine and serine/threonine kinase 73 327 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01039 Car-Chr18:10720494 Car20g00218 Car-Chr20:1256883 1.71E-69 dispersed
Car04g01718 Car-Chr4:9842902 Car18g01039 Car-Chr18:10720494 9.46E-131 transposed
Car18g01039 Car-Chr18:10720494 Car04g01717 Car-Chr4:9841456 3.22E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89542 PF07714 PK_Tyr_Ser-Thr 2.40E-64 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01039 - - csv:101215575 610.912