Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01042 ATGGTTCCCGAATGGCGCCAAGCTTACATGGATTACGATTTTCTCAAGTCCCTTTTGAAGCAAATCGATACCTTCAACAAAACCCACGCCAGAAATCACCCCCCGAGTCACCCTGGCCAGCTCAAAAGGGCTCTGACACTCTACAGGGCGTTCAGTGGGCTGACACTCCGCCACAGCCATAGCCATGGGCTTGCCAGTCCTGGGTCGCCGCCGGATGCAGAGGAGCAGACGATTCTGGTGAACTCGGTGAACAGAGACGGGACGAAGAAGTATCGGACGACGTTTTTGATGGCGGATGAGGAGGGCGGCGAGTATGAGCTGGTGTACTTCCGGTCGTTGGATAGGGAGTTTAATAAAGTGGATAAGTTTTATAGGTCGAAAGTGGAGGAAGTTATGAAGGAAGCGAGTGTTTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATTAAAGTGGAGAATCCTAAGGGTGTTTGGGATTTCTCCGGCGACCGGTCGGAGGAGATTACAAGGCTCGCCACTGATATTGCGGTTTCCACAGCGGCCTTGTCTTCTTCAACTCCTTCCGGGGTCCGAGCTAGCAGACGAGTTCATATAACGATGGACGCTATTGAGGAAGGGGAAGGCGGGTCGAGCCATAACAATAATTTTAAACCGGAGAACGAGTCGAAGGTCGAGAAGGGAGAGGAAAAGTCCAATGGGGAAGAAGAGAAGGAAACAAAGATGAGAGCCAACAGGCCACCTCCATTGGAGCTGCTTGATCGTGTGAAATTGAACACGACAGTAGAGACTCCAAGATCAACAATTAAAGGGCTTTTGAACTTTCCCAAGAACTCAGAGCTTCAATTTAACAAAGAAAATCTAAACAAAATTGAGAATCAACTCAGGAAGGCTTTTGTTGTGTTCTATCACAAGCTTAGACTGCTGAAGAGCTTCAGTTTCTTGAATACTTTGGCATTTTCGAAGATAATGAAGAAATATGATAAGATTACTTCAAGAGATGCTGGAAAGGCTTACATGAAGATGGTGGACAGCTCTTACCTTGGGAGTTCTGATGAGGTTTCCAAGTTAATGGAGAGGGTGGAAGCTGCATTTATCAAACACTTCTGCAATGCTAATCGAACCAAAGGAATGAATATCTTGAGACCCAAAGCAAAGAAAGAAAGGCATAGAACAACATTTTCAGTTGGTTTCTTTGCTGGCTGCACCATAGCTCTTATCGTCGCCCTCATTTTCATTACACGAGCACGACATATACTCGACCGAGAAGGCCGCTCCCAGTATATGGATACCATGTTTCCTCTTTACAGCTTGTTTGGATTCGTTGTCTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGAGATACCAAGTGAATTATTCATTCATTTTTGGTTTCAAACAAGGCACTGAGTTGGCGTACCGTGACGTTTTGCTTCCCAGTTTTGCCGTGGCGACTCTTGCTTTAGCCTGTGTTCTTTCTAACCTTGACATGGAGATGGACCCTGAAACCAAGCCATATCAAGCAGTGACGGAACTTCTACCTTTAGTTTTGCTCCTTGTTGTGGTTGCAGTCTTCTTGTGTCCATTCAACATCCTATATCGGTCGAGTCGCTTCTTCTGCTTAAAAACTCTGTACCGCTGCATATGTGCTCCCCTCTACATGGTCGTCTTTGCTGATTTTTTCTTGGCAGATCAGTTCACGAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCCATTATGGTTGGGGAGATTACAAACATCGACAAAACACTTGTAGAGAGAACACTGTATTCAACACGTTCAGTTTCATCATTGCTGTTATTCCATATTGGTCGCGTCTTCTTCAGTGTCTCAGGCGACTGTATGAGGAGAAAGATGTAATGCAGGGATACAATGGACTGAAGTACTTCTTGACCATTGTAGCTGTTTGCTTGAGGACAGCTTACAGTCTGAACAAGGGAGTATTAACTTGGAAAGTTCTAGCCGCAGTTTTCTCAGCTGTGGCTGCCATTATATGCACGTATTGGGACATCGTAATGGACTGGGGCCTCCTGCAGCGGAATTCCAAGAACCGCTGGTTGAGAGACAAGCTACTTGTTGGTCACAACAGTGTGTATTTTGTAGCAATGGGCTTGAATGTTTTGCTGCGGTTTGCTTGGCTGCAAACCGTGTTGGATTTCCAGTTCTCCTTCCTGCACACACAAGGTTTGATTACAATAGTTGCCAGCCTCGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGCTGGAGAACGAGCATCTGAACAATGTTGGGAAGTACCGTGCATTTAAATCTGTACCGCTGCCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2388 45.44 MVPEWRQAYMDYDFLKSLLKQIDTFNKTHARNHPPSHPGQLKRALTLYRAFSGLTLRHSHSHGLASPGSPPDAEEQTILVNSVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYRSKVEEVMKEASVLNKQMDALIAFRIKVENPKGVWDFSGDRSEEITRLATDIAVSTAALSSSTPSGVRASRRVHITMDAIEEGEGGSSHNNNFKPENESKVEKGEEKSNGEEEKETKMRANRPPPLELLDRVKLNTTVETPRSTIKGLLNFPKNSELQFNKENLNKIENQLRKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKAYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRTTFSVGFFAGCTIALIVALIFITRARHILDREGRSQYMDTMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYRDVLLPSFAVATLALACVLSNLDMEMDPETKPYQAVTELLPLVLLLVVVAVFLCPFNILYRSSRFFCLKTLYRCICAPLYMVVFADFFLADQFTSQVQALRSLEFYICHYGWGDYKHRQNTCRENTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDVMQGYNGLKYFLTIVAVCLRTAYSLNKGVLTWKVLAAVFSAVAAIICTYWDIVMDWGLLQRNSKNRWLRDKLLVGHNSVYFVAMGLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10741170 10745217 + Carg17288-RA Car18g01042 166744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01042 795 ProSiteProfiles SPX domain profile. 1 341 IPR004331 -
Car18g01042 795 ProSiteProfiles EXS domain profile. 600 795 IPR004342 GO:0016021
Car18g01042 795 Pfam EXS family 432 769 IPR004342 GO:0016021
Car18g01042 795 Pfam SPX domain 1 343 IPR004331 -
Car18g01042 795 MobiDBLite consensus disorder prediction 204 247 - -
Car18g01042 795 MobiDBLite consensus disorder prediction 219 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01042 - - - csv:101215812 1379.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g00256 Car18g01042 CCT
Car15g00256 Car18g01042 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00707 Car-Chr12:5244171 Car18g01042 Car-Chr18:10741170 0 dispersed
Car12g00708 Car-Chr12:5262976 Car18g01042 Car-Chr18:10741170 0 dispersed
Car15g00257 Car-Chr15:1406802 Car18g01042 Car-Chr18:10741170 0 dispersed
Car18g01042 Car-Chr18:10741170 Car18g01044 Car-Chr18:10748549 1.63E-13 proximal
Car15g00256 Car-Chr15:1401596 Car18g01042 Car-Chr18:10741170 1.69E-55 wgd
Car18g01042 Car-Chr18:10741170 Car04g01715 Car-Chr4:9825448 0 wgd
Car18g01042 Car-Chr18:10741170 Car04g02676 Car-Chr4:20798017 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01042 Car_Chr18 FPKM 30.667656 33.842304 75.328461 76.708725 22.8951 21.991468 18.252222 2.440886 2.848825 2.298948