Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g01051 | ATGTCCCTCAAAATTGCTATATATTGCCTTCAAAACTCTCCCATTTTGCTCACTCATCTGCCTCACATTATTTCTTCTGGAATGGGTTCTGTTCTTTTGTTTTTGGCAGGCTTCTATGCCATAGTTTCATCTGCTGATGCCTATGCAGGTGGAGGGTGGAGGGGCGCTCAAGCTACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGTCAAGGCTATGGAACAAACACGGCTGCTTTGAGTACGGCTCTGTTTAACAATGGGTTGAGCTGTGGTTCTTGCTATGAGATTAGGTGCACCAGTGGCCGTAAATGGTGCCTACCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAATAGTGCCCTCCCCAACAACGCTGGAGGGTGGTGCAATCCTCCATTGCAGCACTTCGATCTCTCTCAGCCTGTCTACCAACACATTGCGCAGAGAAGGGGAGGGATAAGGTTCACCATCAATGGCCACTCCTACTTCAACTTGGTGCTCATCACAAACGTGGGTGGTGCTGGTGATGTTCATGCAGTTTCCATCAAAGGTTCAAGAACTGGTTGGCAAGCAATGTCAAGGAATTGGGGACAGAACTGGCAGAGCAACAGCTACCTGAATGGCCAAAGCCTGTCCTTCAAGGTCACCACCAGCGACGGCCGGACAGTCATTTCCAACAACGTTGTCCCAGCTCGCTGGTCCTTTGGACAGACTTACAGTGGTGCTCAATTCTAA | 780 | 50.13 | MSLKIAIYCLQNSPILLTHLPHIISSGMGSVLLFLAGFYAIVSSADAYAGGGWRGAQATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCTSGRKWCLPGSIVVTATNFCPPNSALPNNAGGWCNPPLQHFDLSQPVYQHIAQRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPARWSFGQTYSGAQF | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 10776371 | 10777993 | + | Carg17279-RA | Car18g01051 | 166753 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g01051 | 259 | Pfam | Expansin C-terminal domain | 168 | 245 | IPR007117 | - | |
| Car18g01051 | 259 | Pfam | Lytic transglycolase | 88 | 168 | IPR009009 | - | |
| Car18g01051 | 259 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 71 | 168 | IPR007112 | - | |
| Car18g01051 | 259 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 177 | 256 | IPR007117 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g01707 | Car18g01051 | CCT | |
| Car15g00262 | Car18g01051 | CCT | |
| Car04g01707 | Car18g01051 | ECH | |
| Car15g00262 | Car18g01051 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car18g01051 | Car-Chr18:10776371 | Car15g00175 | Car-Chr15:932957 | 3.88E-123 | dispersed | |
| Car01g00437 | Car-Chr1:2498011 | Car18g01051 | Car-Chr18:10776371 | 1.13E-127 | wgd | |
| Car10g00188 | Car-Chr10:902985 | Car18g01051 | Car-Chr18:10776371 | 5.39E-126 | wgd | |
| Car11g00157 | Car-Chr11:869855 | Car18g01051 | Car-Chr18:10776371 | 1.36E-127 | wgd | |
| Car15g00262 | Car-Chr15:1437362 | Car18g01051 | Car-Chr18:10776371 | 6.45E-118 | wgd | |
| Car18g01051 | Car-Chr18:10776371 | Car04g01707 | Car-Chr4:9792612 | 1.50E-155 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g01051 | - | - | cpep:111802732 | 532.332 |