Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01058 ATGGCAATCTCGTGTATTCCAACAAGCCAATTTGCTCTCACAAAACCCAAGAAGGAGTTCATAAATCAACCCCACCCACTTTCTCTTTTCTCCAAATGTACATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTAACCCCACCACTTCGTCTATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTTGTATTCTCTCTTTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGACTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGTGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTGACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCTCTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCTATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCTGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGATGAAGGAAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATAACTCCAGGGATCAAGCATTATGGATGTATGGTCGATTTGCTTGGTCGAACAGGTCGACTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAGGATGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGGGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACACGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTCGAGCTGCGACGAGCGCTCGACGAGTTAATCAAGGAAATAAAGTTAGCGGGATATGCACCGGATACTTCTTTAGTGTATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTTGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCCTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTTGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATCTCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGGTAA 1797 43.35 MAISCIPTSQFALTKPKKEFINQPHPLSLFSKCTSLRELKQIQAYTIKTNLHNDISVLTKLINFCTRNPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKNHGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVGKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDFW 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10811940 10813736 - Carg17272-RA Car18g01058 166760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01058 598 Pfam PPR repeat 164 187 IPR002885 -
Car18g01058 598 Pfam PPR repeat 365 388 IPR002885 -
Car18g01058 598 Pfam PPR repeat 264 289 IPR002885 -
Car18g01058 598 Pfam PPR repeat family 188 235 IPR002885 -
Car18g01058 598 Pfam PPR repeat family 290 336 IPR002885 -
Car18g01058 598 Pfam PPR repeat family 87 135 IPR002885 -
Car18g01058 598 Pfam DYW family of nucleic acid deaminases 505 598 IPR032867 GO:0008270
Car18g01058 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Car18g01058 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Car18g01058 598 Pfam E motif 407 469 IPR046848 -
Car18g01058 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01058 - - - csv:116404120 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00857 Car-Chr11:5259801 Car18g01058 Car-Chr18:10811940 2.79E-115 dispersed
Car18g01058 Car-Chr18:10811940 Car01g00940 Car-Chr1:9068389 8.07E-168 dispersed
Car18g01058 Car-Chr18:10811940 Car12g00314 Car-Chr12:2029349 4.77E-169 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01058 Car_Chr18 FPKM 11.244951 11.53561 13.454633 12.978519 14.346853 15.609813 14.196322 14.822215 14.117567 12.630993