Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01061 ATGTTCATCTATTACAGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTTACTTACTGCCACACCCTCCGATCCCACTTCTCTAAATTGCGCAGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATAATCTCCCCACCCACCGACGTTTCCAATCATATCGCCTCTGCACACCGCCGTCGCCGAAGCCTCAAAGCCCATCCTCGCCGATCCCTTTACAAATTTCGCACATCCCACCGCCAGTTCACTTCTCCGCCCCTCATATGTTGCTGGCATTGAGCACCGGCGCGGCGGCGCAAGAGCAGCGTGGCGGTCGATTCAACCCAAAACAGAGGAAGAGAAACAGGACCAAATTCAGCAGGGATCAAAAGCAAAAGATGCGATCTTTCTCCGAGAAAATGGGATGGAAAATTGGGAAATGTGATGAAAGGTTAGTGGAGGAATTCTGTAATGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGATTCTCAGAGTAGCGAAAATGGAAGGGATGACTCAAAACAGAGCTCATAA 633 51.18 MFIYYRECLKNHAATVGGHALDGCGEFMPLLTATPSDPTSLNCAACGCHRNFHRREPDDNLPTHRRFQSYRLCTPPSPKPQSPSSPIPLQISHIPPPVHFSAPHMLLALSTGAAAQEQRGGRFNPKQRKRNRTKFSRDQKQKMRSFSEKMGWKIGKCDERLVEEFCNEIGIGKRVLRVWMHNNKYMGGRTEKNRDSQSSENGRDDSKQSS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10824746 10825378 + Carg17269-RA Car18g01061 166763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01061 210 MobiDBLite consensus disorder prediction 187 210 - -
Car18g01061 210 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
Car18g01061 210 MobiDBLite consensus disorder prediction 186 210 - -
Car18g01061 210 MobiDBLite consensus disorder prediction 113 146 - -
Car18g01061 210 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00862 Car-Chr11:5329178 Car18g01061 Car-Chr18:10824746 1.81E-60 dispersed
Car14g00535 Car-Chr14:2939620 Car18g01061 Car-Chr18:10824746 1.69E-63 dispersed
Car18g01061 Car-Chr18:10824746 Car07g00426 Car-Chr7:2171365 2.96E-46 dispersed
Car15g00270 Car-Chr15:1466885 Car18g01061 Car-Chr18:10824746 1.39E-13 wgd
Car18g01061 Car-Chr18:10824746 Car04g01696 Car-Chr4:9737682 1.45E-29 wgd
Car18g01061 Car-Chr18:10824746 Car04g02663 Car-Chr4:20741567 2.90E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5211 PF04770 ZF-HD_dimer 4.70E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01061 - - cmo:103489117 303.523