Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car18g01068 | ATGATCATGGACGCTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAACACCACCCTTGTTCCACCTCCGCCAACAACGGAACATCAACCACTACTCCAATTCTTCAATCCTCTTCTTCTTCTTCACCCAACAAGCCCCCTCCCAAAAGGGCCACCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGCCGTATTCGTATGCCCGCTCTTTGCGCTGCTAGGGTTTTTCAGCTCACTAGAGAACTCGGCCACAAGTCCGACGGCGAAACAATTGAGTGGCTTCTACAGCAAGCCGAGCCCGCCGTAATTGCCGCTACCGGAACTGGTACAATTCCGGCGAATTTCACTTCACTTAATATTTCCCTTCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTCCGAACGAGCTATTTCAACCCGACCCAATTCGCCGTTAGAACAAGATCCGATCTTTGGGATCGGAGTAACGCTCTAGTGGATGATTCTTCTACATTCTTGAATTTCAACTCTTCGAACTATGTCAAGCACGATCAGGGTGGAATTGATTTGACTGAGGCGGGAAAAAAACGGCGGCCGGAGCAGTCGGAATCTTCATCGGAAAATCCAATCGGGAATTATTTAGTTCAATCGAATTCCGGGTCGATTCCAGCCAGTCACGGCACGGCGGTGCCAACGACATTTTGGATGATGACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTCCCGTCGATGAGTAGCAGCAGTATGTTCAGAGGAGCAGCTGCAGCTGGTGGCAGTGGCGGGTTTCATTTCATGAATCTTCCACCGCCAATGGCTCTTTTGCCAACTGCCCAACCGTTGGGCTCCGGGATCGGTGGCAGTGGCGGCGGTCCAGCCACCGACACCCACTTGGGGATGTTAGCAGCGCTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTGTCAGAGTCTCCGACAAGAGGAGTGGCGGCTGTTCATCAAAGTGGGAATGAAGCTCATGATTCCACTTCAAATCGTGATCAATCTTAG | 1074 | 51.58 | MIMDAENGIRRPNFPLQLLEKKEEHHPCSTSANNGTSTTTPILQSSSSSSPNKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHFRTSYFNPTQFAVRTRSDLWDRSNALVDDSSTFLNFNSSNYVKHDQGGIDLTEAGKKRRPEQSESSSENPIGNYLVQSNSGSIPASHGTAVPTTFWMMTNPSNPASDPMWTFPSMSSSSMFRGAAAAGGSGGFHFMNLPPPMALLPTAQPLGSGIGGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQSGNEAHDSTSNRDQS | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10862749 | 10863822 | + | Carg17262-RA | Car18g01068 | 166770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 193 | 208 | - | - | |
Car18g01068 | 357 | Pfam | TCP family transcription factor | 60 | 183 | IPR017887 | - | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 19 | 72 | - | - | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 189 | 218 | - | - | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 57 | 72 | - | - | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 327 | 357 | - | - | |
Car18g01068 | 357 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 11 | 337 | IPR005333 | GO:0003700 | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 327 | 351 | - | - | |
Car18g01068 | 357 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - | |
Car18g01068 | 357 | ProSiteProfiles | TCP domain profile. | 61 | 115 | IPR017887 | - | |
Car18g01068 | 357 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 11 | 337 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car04g01690 | Car18g01068 | CCT | |
Car04g01690 | Car18g01068 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01863 | Car-Chr4:10791537 | Car18g01068 | Car-Chr18:10862749 | 3.66E-47 | dispersed | |
Car10g00176 | Car-Chr10:839601 | Car18g01068 | Car-Chr18:10862749 | 7.07E-93 | wgd | |
Car11g00147 | Car-Chr11:831723 | Car18g01068 | Car-Chr18:10862749 | 5.06E-80 | wgd | |
Car13g00957 | Car-Chr13:9659431 | Car18g01068 | Car-Chr18:10862749 | 8.50E-54 | wgd | |
Car18g01068 | Car-Chr18:10862749 | Car04g01690 | Car-Chr4:9711586 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5213 | PF03634 | TCP | 7.40E-38 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car18g01068 | - | - | cmax:111485089 | 585.874 |