Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01068 ATGATCATGGACGCTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAACACCACCCTTGTTCCACCTCCGCCAACAACGGAACATCAACCACTACTCCAATTCTTCAATCCTCTTCTTCTTCTTCACCCAACAAGCCCCCTCCCAAAAGGGCCACCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGCCGTATTCGTATGCCCGCTCTTTGCGCTGCTAGGGTTTTTCAGCTCACTAGAGAACTCGGCCACAAGTCCGACGGCGAAACAATTGAGTGGCTTCTACAGCAAGCCGAGCCCGCCGTAATTGCCGCTACCGGAACTGGTACAATTCCGGCGAATTTCACTTCACTTAATATTTCCCTTCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTCCGAACGAGCTATTTCAACCCGACCCAATTCGCCGTTAGAACAAGATCCGATCTTTGGGATCGGAGTAACGCTCTAGTGGATGATTCTTCTACATTCTTGAATTTCAACTCTTCGAACTATGTCAAGCACGATCAGGGTGGAATTGATTTGACTGAGGCGGGAAAAAAACGGCGGCCGGAGCAGTCGGAATCTTCATCGGAAAATCCAATCGGGAATTATTTAGTTCAATCGAATTCCGGGTCGATTCCAGCCAGTCACGGCACGGCGGTGCCAACGACATTTTGGATGATGACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTCCCGTCGATGAGTAGCAGCAGTATGTTCAGAGGAGCAGCTGCAGCTGGTGGCAGTGGCGGGTTTCATTTCATGAATCTTCCACCGCCAATGGCTCTTTTGCCAACTGCCCAACCGTTGGGCTCCGGGATCGGTGGCAGTGGCGGCGGTCCAGCCACCGACACCCACTTGGGGATGTTAGCAGCGCTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTGTCAGAGTCTCCGACAAGAGGAGTGGCGGCTGTTCATCAAAGTGGGAATGAAGCTCATGATTCCACTTCAAATCGTGATCAATCTTAG 1074 51.58 MIMDAENGIRRPNFPLQLLEKKEEHHPCSTSANNGTSTTTPILQSSSSSSPNKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHFRTSYFNPTQFAVRTRSDLWDRSNALVDDSSTFLNFNSSNYVKHDQGGIDLTEAGKKRRPEQSESSSENPIGNYLVQSNSGSIPASHGTAVPTTFWMMTNPSNPASDPMWTFPSMSSSSMFRGAAAAGGSGGFHFMNLPPPMALLPTAQPLGSGIGGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQSGNEAHDSTSNRDQS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10862749 10863822 + Carg17262-RA Car18g01068 166770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01068 357 MobiDBLite consensus disorder prediction 193 208 - -
Car18g01068 357 Pfam TCP family transcription factor 60 183 IPR017887 -
Car18g01068 357 MobiDBLite consensus disorder prediction 19 72 - -
Car18g01068 357 MobiDBLite consensus disorder prediction 189 218 - -
Car18g01068 357 MobiDBLite consensus disorder prediction 57 72 - -
Car18g01068 357 MobiDBLite consensus disorder prediction 327 357 - -
Car18g01068 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 337 IPR005333 GO:0003700
Car18g01068 357 MobiDBLite consensus disorder prediction 327 351 - -
Car18g01068 357 MobiDBLite consensus disorder prediction 29 56 - -
Car18g01068 357 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Car18g01068 357 PANTHER TRANSCRIPTION FACTOR TCP23 11 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01690 Car18g01068 CCT
Car04g01690 Car18g01068 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01863 Car-Chr4:10791537 Car18g01068 Car-Chr18:10862749 3.66E-47 dispersed
Car10g00176 Car-Chr10:839601 Car18g01068 Car-Chr18:10862749 7.07E-93 wgd
Car11g00147 Car-Chr11:831723 Car18g01068 Car-Chr18:10862749 5.06E-80 wgd
Car13g00957 Car-Chr13:9659431 Car18g01068 Car-Chr18:10862749 8.50E-54 wgd
Car18g01068 Car-Chr18:10862749 Car04g01690 Car-Chr4:9711586 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5213 PF03634 TCP 7.40E-38 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01068 - - cmax:111485089 585.874