Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01069 ATGGGTTCGGGGAACTTTCTTCAAGTCGTGGCCAACAACTTCGATGTTCTTGCTCTGCCAGTGGTTTGTCTGGTGTATCCACTTTACGCTTCGATCAAGGCTATCGAGACGAAGTCAATTGTGGATGATCAGCAATGGCTCACTTACTGGGTTTTGTACTCACTCATGACTCTCTTCGAGCTCACGTTTGCCAAAGTTCTAGAAGTGGTTGCGGTTTGGCCCTACGTGAAGCTGATAATAATGAGCTGGTTGGTGCTGCCACACTTCAATGGAGCAGCACACGTTTACAAAAACTTCATTAGGCCATACTATATGAACCCACAAACTTCAACGCTATGGTATATTCCTCAAAAGACCAAAGAAATTTTCAGTGCCCCAGATGATGTTTTAACTGCTGCTGAGAAGTACATGGAACAACATGGAACTGAAGCTTTCGAAAGGCTTATGCACAAGCAGCAGTCTGAAAGAGATAGGCCGAGGAGGAACAACAATTACATGATATTCGATGATGATTACGTATATTGA 525 43.81 MGSGNFLQVVANNFDVLALPVVCLVYPLYASIKAIETKSIVDDQQWLTYWVLYSLMTLFELTFAKVLEVVAVWPYVKLIIMSWLVLPHFNGAAHVYKNFIRPYYMNPQTSTLWYIPQKTKEIFSAPDDVLTAAEKYMEQHGTEAFERLMHKQQSERDRPRRNNNYMIFDDDYVY 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10865345 10866962 + Carg17261-RA Car18g01069 166771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01069 174 PANTHER HVA22-LIKE PROTEINS 1 173 IPR004345 -
Car18g01069 174 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Car18g01069 174 PANTHER HVA22-LIKE PROTEIN 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01069 K17279 REEP5_6; receptor expression-enhancing protein 5/6 - csv:101220261 324.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00033 Car-Chr2:276702 Car18g01069 Car-Chr18:10865345 5.43E-42 dispersed
Car18g01069 Car-Chr18:10865345 Car20g00219 Car-Chr20:1270123 2.82E-40 dispersed
Car01g00717 Car-Chr1:4398243 Car18g01069 Car-Chr18:10865345 1.75E-59 wgd
Car10g00174 Car-Chr10:830956 Car18g01069 Car-Chr18:10865345 4.06E-40 wgd
Car11g00143 Car-Chr11:820099 Car18g01069 Car-Chr18:10865345 1.01E-31 wgd
Car13g00956 Car-Chr13:9657940 Car18g01069 Car-Chr18:10865345 2.15E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g893 . . . . . Bpe10g00865 . Bma15g00162 . . . . . Car18g01069 Sed04g0698 Cpe09g00169 . Bhi07g01578 Tan04g1092 Cmetu10g1278 . . . . Cla05g02452 Cam05g2638 Cec05g2671 . Clacu05g2641 Cmu05g2495 Cre05g2608 Cone13ag0962 Cone19ag0953 . . Lsi04g00435 Csa05g02439 Chy10g00991 Cme10g00426 Blo06g00903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000844 3 4 0 3 3 3 5 2 3 2 3 3 3 3 3 4 3 5 2 3 3 3 3 2 3 3 3 5 3 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01069 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.007902 0.0 0.0 0.877954