Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01074 GCAGCTCCGGCAGTCATCATGACGAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTCCAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTTCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAGAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACAAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAAACAGGCCTCTTTTCCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 912 43.86 AAPAVIMTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10902709 10904427 + Carg17256-RA Car18g01074 166776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01074 303 Coils Coil 137 185 - -
Car18g01074 303 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Car18g01074 303 MobiDBLite consensus disorder prediction 193 215 - -
Car18g01074 303 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Car18g01074 303 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355|GO:0043565
Car18g01074 303 MobiDBLite consensus disorder prediction 246 278 - -
Car18g01074 303 MobiDBLite consensus disorder prediction 70 90 - -
Car18g01074 303 MobiDBLite consensus disorder prediction 186 278 - -
Car18g01074 303 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01684 Car18g01074 CCT
Car15g00277 Car18g01074 CCT
Car04g01684 Car18g01074 ECH
Car15g00277 Car18g01074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00757 Car-Chr16:4792081 Car18g01074 Car-Chr18:10902709 2.53E-38 dispersed
Car18g01074 Car-Chr18:10902709 Car07g00496 Car-Chr7:2483443 1.44E-36 dispersed
Car15g00277 Car-Chr15:1511662 Car18g01074 Car-Chr18:10902709 1.32E-78 wgd
Car18g01074 Car-Chr18:10902709 Car04g01684 Car-Chr4:9680977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5215 PF00046 Homeodomain 3.00E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01074 K09338 - csv:101221595 530.791