Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car18g01074 | GCAGCTCCGGCAGTCATCATGACGAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTCCAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTTCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAGAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACAAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAAACAGGCCTCTTTTCCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 912 | 43.86 | AAPAVIMTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 10902709 | 10904427 | + | Carg17256-RA | Car18g01074 | 166776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car18g01074 | 303 | Coils | Coil | 137 | 185 | - | - | |
Car18g01074 | 303 | ProSiteProfiles | 'Homeobox' domain profile. | 85 | 145 | IPR001356 | GO:0003677 | |
Car18g01074 | 303 | MobiDBLite | consensus disorder prediction | 193 | 215 | - | - | |
Car18g01074 | 303 | Pfam | Homeodomain | 90 | 143 | IPR001356 | GO:0003677 | |
Car18g01074 | 303 | Pfam | Homeobox associated leucine zipper | 145 | 185 | IPR003106 | GO:0006355|GO:0043565 | |
Car18g01074 | 303 | MobiDBLite | consensus disorder prediction | 246 | 278 | - | - | |
Car18g01074 | 303 | MobiDBLite | consensus disorder prediction | 70 | 90 | - | - | |
Car18g01074 | 303 | MobiDBLite | consensus disorder prediction | 186 | 278 | - | - | |
Car18g01074 | 303 | ProSitePatterns | 'Homeobox' domain signature. | 120 | 143 | IPR017970 | GO:0000981|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car04g01684 | Car18g01074 | CCT | |
Car15g00277 | Car18g01074 | CCT | |
Car04g01684 | Car18g01074 | ECH | |
Car15g00277 | Car18g01074 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car16g00757 | Car-Chr16:4792081 | Car18g01074 | Car-Chr18:10902709 | 2.53E-38 | dispersed | |
Car18g01074 | Car-Chr18:10902709 | Car07g00496 | Car-Chr7:2483443 | 1.44E-36 | dispersed | |
Car15g00277 | Car-Chr15:1511662 | Car18g01074 | Car-Chr18:10902709 | 1.32E-78 | wgd | |
Car18g01074 | Car-Chr18:10902709 | Car04g01684 | Car-Chr4:9680977 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5215 | PF00046 | Homeodomain | 3.00E-15 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car18g01074 | K09338 | - | csv:101221595 | 530.791 |