Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01077 TTAGTTTCTAAACAATGGCTGATTCTGCCTTCCCCTGTTCCCAATTTTCTTTTTCCTTGCTTTTCTGATGAGGTTTGCAGTAGAGCTTTAAGTTTCAGCTTCAAGAACATGAAGAATTCCTGGTTTTCTTTCTGTTTTTGGTTTCCTATTTTTGTTCTTGCTGTTCTTGTTCCAGTTTCAACAGGACAGCTTTCTCCAAGTGAAAGCAGAATCCTTTTCCAAATTCAAAAGCTTCTGGAATATCCTGTTGCTCTTCAACAATGGTCAAACTGGACCAACTTCTGTTATTTACCTCCTACTTCTTCACTCAGAATTGTCTGTTCTGGGACTCACATAACAGAATTAACTGTCATTGGGAACAAAACCTCCCCTTCCAAAACCCCAAAATCAGTTTCTGTGAGTTCCATCCCTTCTCAGCAGACTCTTTCCAATAGCTTCTCCATTGATTCCTTCTTTACTGTTCTCACCAAGCTTTCGAACCTGAAAGTGTTATCATTAGTGTCTTTGGGGTTGTGGGGTCCTTTTCCTTCCAAAATCAATAGGCTCTCATCTCTGGAAGTGCTTAACATAAGCTCAAATTTCATCTATGGAGGCATCCCTGCAACAATCTCTAGACTTGAAAGCCTCAAGAGCCTTGTTTTAGCTGATAATTTGCTCAATGGAAGCGTTCCAGATCTTAAAGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAAAATCAACTGAGCCAAAAAGTTCCACCTCTGAGTGGAACTCTTGTGATCGTCGTATTGAGAAAAAACTTGTTCAGATCTGAAATTCCTTCAAGAATCAAGGAACTCAATAAGCTTCAGCTATTGGATATTTCCTACAATAAGTTTCTTGGGCCAATCCATTCTTCTCTGTTTTCTCTACCTGCAATTCAGTATCTGAACCTAGCTTATAACCAATTAAGTGGAGCACTCTCTGTCAACACAACTTGCAACAGAAACCTTAAGTTTGTAGACGTTTCCCACAACCTCTTGATAGGAAAGTTACCCTCTTGCATTGTGTCGAATTCGTCGAATCGTACCGTAAATAGTTCATGGAACTGCTTGTCAGGTGGAAACTCGAAGCTCCAGCATTCTCTTTCATACTGCCGGAAGGAAGCAATGGCTGTAAAGCCTCCAGGTGACCTACAGAAACAGAAACCTGGCATCAAACTTGGTCTTATGCTCGCCGTCATAGGAGGCGTAGTGGTAGTTTCCGGTGTTGTTCTGTTATTGGTTTTTGCAATCATCCGAAACAAAAGAAGAAGAAGATTTGGAGAGATGAAATATGAGAAATCTACAGTTCATAGACAATCTGTTCGTGGCTCTCCACTGCCTAACCGACGAGTGCCACAGACAAGGCTACCAGCACTTGGGCTGCCGCCTTATCGGGTCTTCGCAGTGGAAGAGATTGAAGAGATCACAAGAAACTTCGACCCATCAAACTTGGCCGCTCAAGGATCCCAAGCACAGATTTATAAAGGGTGGCTGACTGATGGTTCAGTGGTCTTGATCAAATGCTTTAAACTAAGGCAAAAACTTGCACCTCAAGCCTTAGCACGGCACATGGAAGAGCTCCCAAATCTGAGGCATCGGCATTTGGTCAGTGTTCTTGGACACTGCACCGTCACTTACCAAGACCAATTGAACCCAGCCAGTACTGTCTTCGTTGTTAATGAATTCATATCCAACGGCTCATTGAAGGATTGTCTTACAGATTGGAAAAGGAAGGACGCTCTGAAATGGCCACAGAGAATGGGAATTACCATCGGCATTGCCAGGGGAATACAGCATCTGCATACTGGAATGGCGCCGGGCATCTTCGACAACAATATCACGATTGATAACATTTTGTTGGACGACACGCTGACCGCAAAAATAAGCAATTACAACGTTCTCACGCCGCTAAAGGATGCAGAGAGCGGGCTGAATGTACCAAAAAGAAGTGGGAATCCGGAGAAGGAAGACATCTTTCAATTTGGTGCCATTTTGCTGCAAGTCATCACCGGTAGGCCGATCACATCCACAAGTGAACTGGATGATCTGAAGAGTGAGTTTGAAGGTGGCTTGGCAGAAGGACTGAAATTACGGGGCGTTATCGATCCTTCAATTCAGGGTTCTTTTGCATTTGATTCACTGAAGACGACAATTCAAATCGCCATCAACTGCCTCAACAAAGATCCAAACAAACGCCCTTCCGTTGAAGATGTACTCTGGAATTTGCAGTATTCAATGCAAGTTCAGGAAGGATGGACAAGTAGTGGAAACCTCGGAGCTTTCATA 2292 43.28 LVSKQWLILPSPVPNFLFPCFSDEVCSRALSFSFKNMKNSWFSFCFWFPIFVLAVLVPVSTGQLSPSESRILFQIQKLLEYPVALQQWSNWTNFCYLPPTSSLRIVCSGTHITELTVIGNKTSPSKTPKSVSVSSIPSQQTLSNSFSIDSFFTVLTKLSNLKVLSLVSLGLWGPFPSKINRLSSLEVLNISSNFIYGGIPATISRLESLKSLVLADNLLNGSVPDLKGLAVLEELNLGQNQLSQKVPPLSGTLVIVVLRKNLFRSEIPSRIKELNKLQLLDISYNKFLGPIHSSLFSLPAIQYLNLAYNQLSGALSVNTTCNRNLKFVDVSHNLLIGKLPSCIVSNSSNRTVNSSWNCLSGGNSKLQHSLSYCRKEAMAVKPPGDLQKQKPGIKLGLMLAVIGGVVVVSGVVLLLVFAIIRNKRRRRFGEMKYEKSTVHRQSVRGSPLPNRRVPQTRLPALGLPPYRVFAVEEIEEITRNFDPSNLAAQGSQAQIYKGWLTDGSVVLIKCFKLRQKLAPQALARHMEELPNLRHRHLVSVLGHCTVTYQDQLNPASTVFVVNEFISNGSLKDCLTDWKRKDALKWPQRMGITIGIARGIQHLHTGMAPGIFDNNITIDNILLDDTLTAKISNYNVLTPLKDAESGLNVPKRSGNPEKEDIFQFGAILLQVITGRPITSTSELDDLKSEFEGGLAEGLKLRGVIDPSIQGSFAFDSLKTTIQIAINCLNKDPNKRPSVEDVLWNLQYSMQVQEGWTSSGNLGAFI 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10930947 10933778 + Carg17253-RA Car18g01077 166779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01077 764 ProSiteProfiles Protein kinase domain profile. 481 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01077 764 Pfam Leucine rich repeat 184 242 IPR001611 GO:0005515
Car18g01077 764 Pfam Protein tyrosine and serine/threonine kinase 488 639 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01077 - - - csv:101222534 1174.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00220 Car-Chr18:1249364 Car18g01077 Car-Chr18:10930947 7.20E-121 dispersed
Car18g01077 Car-Chr18:10930947 Car16g00121 Car-Chr16:709313 3.86E-11 dispersed
Car18g01077 Car-Chr18:10930947 Car03g00189 Car-Chr3:3170855 5.31E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89543 PF07714 PK_Tyr_Ser-Thr 5.20E-13 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01077 Car_Chr18 FPKM 0.383961 0.268946 0.767542 0.499029 1.073071 1.297748 1.897878 0.595589 0.378322 0.632435