Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01100 ATGGGTAATACGTATTGTGTTTTGTTCGGCTGCGTGGAGCAAGCGAGTGTGGGGGTGGTTGAGAGATGGGGAAGGTTTGAAAAATTGGCTCAGCCTGGGCTCCATTTCTTCAACCCTTTTGCCGGTCAGTGTCTTGCCGGATTCCTCTCCACTAGGATTTCCTCCCTTGATGTTCGTATTGAGACCAAGACCAAGGATAATGTCTTTGTGCAATTGCTGTGTTCAATTCAGTATCGGGTCATCAAAGAAAATGCTCATGATGCGTTTTATGAGTTGCAAAATCCCCAAGAACAGATTCAGGCCTACGTGTTTGATGTGGTTCGAGCCGTTGTCCCTAGAATGAATTTGGATGAACTCTTTGAACAAAAGGGTGAAGTTGCTAAAGCTGTATCGGAGGAACTTGAGAAGGTGATGGGAGACTATGGATATAGTATAGAGCACATTTTAATGGTCGATATAATACCGGATGCTTCGGTGCGCAGCGCAATGAATGAGATTAATGCAGCTCAAAGGCTTCAACTTGCTAGTGTATACAAAGGCGAAGCGGAGAAGGTGCTCCTAGTAAAAAAGGCAGAAGCTGAAGCTGAAGCGAAATACCTAGGCGGGGTCGGTGTGGCGAGGCAGAGACAGGCAATCACAGATGGTCTGAGAGAGAATATCTTGAACTTCTCCCATAGGGTGGAAGGTACCTCAGCTAAAGAGGTCATGGATCTGATCTTGATTACTCAATATTTTGACACCATCAAGGACCTTGGAAATTCATCCAAGAACACAACTGTGTTCATTCCTCACGGTCCTGGCCATGTTAGAGATGTCAGCGACCAAATACGCAGCGGGATGATGGAGGCTGCGAGTGCACAGTCAGCGCTCACTAATGATGAGGTGAACATCAATTTACTCCATTGA 906 46.14 MGNTYCVLFGCVEQASVGVVERWGRFEKLAQPGLHFFNPFAGQCLAGFLSTRISSLDVRIETKTKDNVFVQLLCSIQYRVIKENAHDAFYELQNPQEQIQAYVFDVVRAVVPRMNLDELFEQKGEVAKAVSEELEKVMGDYGYSIEHILMVDIIPDASVRSAMNEINAAQRLQLASVYKGEAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHRVEGTSAKEVMDLILITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDVSDQIRSGMMEAASAQSALTNDEVNINLLH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11032806 11035843 + Carg17230-RA Car18g01100 166802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01100 301 Pfam SPFH domain / Band 7 family 12 183 IPR001107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01100 - - - csv:101208816 539.265
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00156 Car18g01100 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00682 Car-Chr12:4724728 Car18g01100 Car-Chr18:11032806 1.17E-112 dispersed
Car12g00684 Car-Chr12:4730387 Car18g01100 Car-Chr18:11032806 3.95E-112 dispersed
Car18g01100 Car-Chr18:11032806 Car18g01263 Car-Chr18:11938764 5.01E-09 dispersed
Car01g01249 Car-Chr1:11404282 Car18g01100 Car-Chr18:11032806 1.41E-36 transposed
Car11g00137 Car-Chr11:776604 Car18g01100 Car-Chr18:11032806 1.04E-108 transposed
Car16g00156 Car-Chr16:879897 Car18g01100 Car-Chr18:11032806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
Vvi16g491 Blo06g01096 Blo15g00140 . . . Bpe07g00971 . . Cmo16g00187 Cmo18g01213 . . . . Sed01g3678 . Cpe14g00148 Bhi01g01243 Tan01g0359 Cmetu09g0530 . Hepe07g0231 Mch10g0232 . Cla01g00504 Cam01g0524 Cec01g0517 Cco01g0541 Clacu01g0526 Cmu01g0499 Cre09g2010 . . . . Lsi05g01309 Csa05g00542 . Cme06g00919 . . . Bda15g00756 . Bpe12g00397 Bma08g00358 . . . . Cma16g00180 . Car16g00156 Car18g01100 Cpe09g00138 . Bhi12g00579 . . . . . . . . . . . . . Lsi09g00544 Csa03g01632 Chy06g00870 Cme09g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003247 2 2 2 1 2 2 2 1 2 1 1 2 1 2 1 2 2 1 2 2 2 2 2 2 2 2 1 1 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01100 Car_Chr18 FPKM 1.124294 0.0 1.265892 2.306805 0.804743 0.45334 0.905711 0.0 0.371718 0.0