Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g01102 | ATGGAGGAGGAGAAAGAAGCCGGAGTTTCTAGGTTTACAGTTACCAACAATGAAGCCCTAGACACCTTCCAGTTAGCTCCCAGAACAGAAACCCTAAAACCCACCAATGAGCCTAAAGTAACGGCTACGACCACACCGGCGAGCATCCCAACCACTGCACCACCACCGGGATTCACGGCGGTTTCCACTACAGATACAAAGAAGAAGAGAGGTCGGCCGAGAAAGTACGAGGCGGATGGGAAGCGGTCACTGACATTAGCGTTGTCTCCGATGCCGATATCATCGTCAATTCCACTGACCGGCGAGTTCCCGAACTGGAAACGTGACAACGACATGTCTCTAGCGATAATCAAAAAGCCACAGAGATTTGAGTTTGAGAATCCGGGTCAGAAACTTGCATACTCTGTTGGTGCTAATTTTACTCCCCATGTTATCACTGTCAATGCTGGAGAGGACATTACTATGAAGATCATGTCTCTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCACAATTTCAAATGTCACACTTCGACAGGCCACTTCTTCCGGAGGTACCTTAACGTACGAGGGTTGTTTTGAAATACTCGCATTGACTGGATCGTTTATGCCGACACAGAATGGAGCGACAAAGAGTAGATGTGGTGGGATGAGCGTTTCCCTAGCGGGTCAAGATGGACAAGTCGTCGGCGGTGGACTTGCTGGGTTGTTGGTAGCTGCTGGTCCTGTTCAAGTTGTGGTAGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGGCCACAACCATATTCTTTCCTCCCATCAATACCATCAGTGGTGAAGAAATGAAGGCGGCATACACCAGTGGTATCAAGCCTATTGTCACCACAACGTCCAATCAAGAACATAAGCCACCATCGCCAAGCGCAGTGACACCCTTCAAAATCTCCTCCACTGACAACTTACCTCAAACAGAACAAGAACCCAAAACTCAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA | 1041 | 48.03 | MEEEKEAGVSRFTVTNNEALDTFQLAPRTETLKPTNEPKVTATTTPASIPTTAPPPGFTAVSTTDTKKKRGRPRKYEADGKRSLTLALSPMPISSSIPLTGEFPNWKRDNDMSLAIIKKPQRFEFENPGQKLAYSVGANFTPHVITVNAGEDITMKIMSLSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGCFEILALTGSFMPTQNGATKSRCGGMSVSLAGQDGQVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNEATTIFFPPINTISGEEMKAAYTSGIKPIVTTTSNQEHKPPSPSAVTPFKISSTDNLPQTEQEPKTQSQSNCEVSC | 346 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 11045895 | 11049005 | - | Carg17228-RA | Car18g01102 | 166804 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g01102 | 346 | Coils | Coil | 343 | 346 | - | - | |
| Car18g01102 | 346 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
| Car18g01102 | 346 | MobiDBLite | consensus disorder prediction | 302 | 346 | - | - | |
| Car18g01102 | 346 | ProSiteProfiles | PPC domain profile profile. | 137 | 281 | IPR005175 | - | |
| Car18g01102 | 346 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 142 | 255 | IPR005175 | - | |
| Car18g01102 | 346 | MobiDBLite | consensus disorder prediction | 24 | 76 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car02g00752 | Car18g01102 | CCT | |
| Car15g01247 | Car18g01102 | CCT | |
| Car02g00752 | Car18g01102 | ECH | |
| Car15g01247 | Car18g01102 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g01247 | Car-Chr15:9673141 | Car18g01102 | Car-Chr18:11045895 | 4.04E-64 | dispersed | |
| Car16g00986 | Car-Chr16:8368895 | Car18g01102 | Car-Chr18:11045895 | 2.92E-76 | dispersed | |
| Car18g01102 | Car-Chr18:11045895 | Car01g01608 | Car-Chr1:13213409 | 7.40E-57 | dispersed | |
| Car15g01061 | Car-Chr15:8352036 | Car18g01102 | Car-Chr18:11045895 | 2.80E-85 | wgd | |
| Car18g01102 | Car-Chr18:11045895 | Car02g00752 | Car-Chr2:5508278 | 2.71E-101 | wgd | |
| Car18g01102 | Car-Chr18:11045895 | Car02g01272 | Car-Chr2:8526097 | 1.25E-76 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g01102 | - | - | csv:101217222 | 527.324 |