Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01124 ATGCGTGTGGCTTCTCACTCAAAGCTCTGGGAATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCCTTTTCCTTTATAAACTCTTCTCTGTTTCTTCCCCATTTCATTGCATCTGCTTCTGAATCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA 717 54.25 MRVASHSKLWECCPRIPHGFYSSSPFSFINSSLFLPHFIASASESDSFMSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAPAAHTRPVGGAGFSSDATAAAAAAREFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11208387 11209103 - Carg26814-RA Car18g01124 166826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01124 238 MobiDBLite consensus disorder prediction 214 238 - -
Car18g01124 238 ProSiteProfiles AP2/ERF domain profile. 69 125 IPR001471 GO:0003700|GO:0006355
Car18g01124 238 MobiDBLite consensus disorder prediction 217 238 - -
Car18g01124 238 CDD AP2 68 127 IPR001471 GO:0003700|GO:0006355
Car18g01124 238 MobiDBLite consensus disorder prediction 49 68 - -
Car18g01124 238 Gene3D AP2/ERF domain 69 126 IPR036955 GO:0003700|GO:0006355
Car18g01124 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 40 237 - -
Car18g01124 238 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677
Car18g01124 238 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Car18g01124 238 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Car18g01124 238 MobiDBLite consensus disorder prediction 153 173 - -
Car18g01124 238 Pfam AP2 domain 68 117 IPR001471 GO:0003700|GO:0006355
Car18g01124 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 237 - -
Car18g01124 238 MobiDBLite consensus disorder prediction 49 82 - -
Car18g01124 238 SMART rav1_2 69 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00962 Car-Chr16:8019931 Car18g01124 Car-Chr18:11208387 1.33E-45 dispersed
Car18g01124 Car-Chr18:11208387 Car14g00257 Car-Chr14:1207041 2.17E-42 dispersed
Car15g01085 Car-Chr15:8516066 Car18g01124 Car-Chr18:11208387 2.90E-23 wgd
Car18g01124 Car-Chr18:11208387 Car02g01243 Car-Chr2:8409741 9.28E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5220 PF00847 AP2 1.30E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01124 - - cmos:111449416 383.259