Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01138 ATGCCTAATGGTGCAGTTGCTGACCCGAGCTTTCTGGCTTTCCCAATTCCCTGTTCATTGCCTAACTCCTCTGAATTCTCCAATTCCATAGGGAAAATGGATGGATATAGAGAAGCTTGTCTGCTTGGGGACAGCTTTGATCCGAATGGAGTTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCTGGGGATGATCAGGATGCTAATGACGAACGACGACGAAAAAGGAAGAAGTACCATAGGCATACCCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGTCCTCATCCAGATGATAAACAAAGGAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGTCGAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACCCAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCACGAAAACGATAAGCTTCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCGAACCCAACGTGCAATACATGCGGTGGACCTTCAATTCCTGTTCATCTATCGTTCGAGGAACACCAGCTTAGGATTGATAATGGCAGATTAAGGGATGAACTGCACCGGTTATATACCGTCACCAACAAGTTCTTGGGCTGGCCGGTTTTGCCCTTTGTCAATCATAGCTCTTCAGTGAGCTCTGACTCGTGCTTGGAACTTTCTGTTGGAAGAAATGGAATGGGAAATTTGAGTAACATTTCTGATCCTATGCCTATGGGGCTTAACTTGGGAAACGGACTTTTCAATGGTGGCCCTGTGATGCCTATTAGTAAGTCTCAAATGGGCATGCCAGGCAATGATATACCAATTGACAGAACAATATATGTGGATCTTGCTTTGGCTGCTATGGATGAATTGGTTAAGATGGCTCAAATTGATACCCCCCTTTGGGTCAGAAGCCGGGATAGCAGTGGCAAAGAGACGTTGAACTTCGACGAATATTCCAGGACATTTCCTTCGTCGGCTGCCATGCAACACACTAATTGGACGACAGAGGCTACCAGAGATACTACAATGGTCATCATCAACAGCATGGCACTCATCGAGACGTTGATGGATGCAAACCGATGGGCAGAAATGTTTCCTTGTTTGATTGCTAGAGCCACAACAATCGATGTGATATCAAATGGCATGGGTGGAACTAGAAATGGTTCATTACAATTGATGCATGCTGAACTTCGAGTACTTTCCCCGCTTGTTCCTGTTCGTACTCTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTGTGGGCTGTAGTTGATGTTTCCCTCGGAGAAGGCGCGGATGCAGACATGTTTTTCAGTTGCAGGAGGCTCCCTTCCGGCTGTATTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAAACTGTTGTACACCAACTTTACCGCCAGATAATTAGTTGGGGCATCGGCTTCGGTTCGCAACGGTGGCTTGCTACCCTTCAAAGACAATGTGACTGTCTGGCAATTCTTATGTCTTCTACGGAAGGTCCTGCAGGAATATCGCCACACGGTAGGAGAAGTATGCTGAAACTATCCCAGCGTATGGTTGATAACTTCTGTTCTGGGATTTGTACTTCGACATTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAAGATGTAAAAATGATGGCTAGAAACAGCATCAACGATCCTGGCGAGCCACCGGGTATCGTGTTGAGCGCTGCAACTTCTGTTTGGATGCCAGTAACTCAGCAGAGATTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGCGAATGGGACATTTTATCCAATGGCAGACCAATGATAGAGATGCTTCGCATATCGAAAGGCCAGGGACTGGATAACCGTGTTTCTCTCCTGCGCGCTAACCCCATGAATGCTAATGAGAACACCATGCTTATATTGCAAGAGAGTTGGACTGATATTTCAGGCTCACTGATCGTTTACGCTCCAGTCGACGCAGCCTCCGTTAACTTGGTGATGCGTGGAGGAGATTCGGCTTATGTATCGCTACTACCTTCAGGATTCGCCGTTCTCCCCGATGGCCCATCCAACTATGCTTCTACTAACAACGACAAAGACGGTTCGATCATGTCAGACATTAACAGTGGCTATGCTGGTGGATGCCTTCTCACAGTTGCATTCCAAATCTTGGTGAATAACCTTCCAACAGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAGTTGCCCTTCGAGTATCGTAA 2352 46.09 MPNGAVADPSFLAFPIPCSLPNSSEFSNSIGKMDGYREACLLGDSFDPNGVVRMREDEYDSRSGSDNIDGAVSGDDQDANDERRRKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMKTQIERHENAILKHENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIDNGRLRDELHRLYTVTNKFLGWPVLPFVNHSSSVSSDSCLELSVGRNGMGNLSNISDPMPMGLNLGNGLFNGGPVMPISKSQMGMPGNDIPIDRTIYVDLALAAMDELVKMAQIDTPLWVRSRDSSGKETLNFDEYSRTFPSSAAMQHTNWTTEATRDTTMVIINSMALIETLMDANRWAEMFPCLIARATTIDVISNGMGGTRNGSLQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSLGEGADADMFFSCRRLPSGCIVQDMPNGFSKVTWVEHTEYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCDCLAILMSSTEGPAGISPHGRRSMLKLSQRMVDNFCSGICTSTLHKWDKLVVGNISEDVKMMARNSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNGRPMIEMLRISKGQGLDNRVSLLRANPMNANENTMLILQESWTDISGSLIVYAPVDAASVNLVMRGGDSAYVSLLPSGFAVLPDGPSNYASTNNDKDGSIMSDINSGYAGGCLLTVAFQILVNNLPTAKLTVESVETVNNLISCTIQKIKVALRVS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11310355 11314194 + Carg22086-RA Car18g01138 166840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01138 783 ProSiteProfiles START domain profile. 287 521 IPR002913 GO:0008289
Car18g01138 783 MobiDBLite consensus disorder prediction 57 94 - -
Car18g01138 783 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Car18g01138 783 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Car18g01138 783 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Car18g01138 783 Coils Coil 138 165 - -
Car18g01138 783 Pfam START domain 297 517 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00801 Car-Chr8:5389491 Car18g01138 Car-Chr18:11310355 1.92E-123 dispersed
Car08g00802 Car-Chr8:5391338 Car18g01138 Car-Chr18:11310355 1.02E-158 dispersed
Car17g00018 Car-Chr17:71992 Car18g01138 Car-Chr18:11310355 0 dispersed
Car18g01138 Car-Chr18:11310355 Car19g00719 Car-Chr19:8221874 0 dispersed
Car14g01815 Car-Chr14:14156770 Car18g01138 Car-Chr18:11310355 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5222 PF01852 START 3.90E-46 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01138 K09338 - csv:101218216 1344.72