Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01139 ATGGGTATGGAGCTGAAACGTCTCTTTCTCATTTTCTTCTTCTTCTTCGAGCTCTGTATTTTGACCTCCAATGGCGTTTCTGACCACAATCAGATTCTTCTCGACAGAGAAAGCTTGCTTTCTTTCAAAGCATTGCTAGACACCTCAAAAACCCTTCCATGGAACTCATTGGTCCCTCACTGCTTCTGGGTCGGCGTTTCTTGCCGATTCCGTCGAGTTACAGAGCTCTCCCTTTCATCTCTTTCCCTTAAAGGCCGACTCTCTCCTTCCCTTTTCAATATCTCGAGCCTCTCTGTTCTTGACCTTTCAAACAACGGCCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGACGGAAATCAGTTTTCCGGCGACTTCCCCATCGGACTCACTGAGTTGACCCAGATGGAGAATCTCAAGTTGGGGACTAATTTGTTTACAGGGACAATCCCGCCGGAGCTTGGAAATTTAAAGCAACTACGGACGCTTGACCTTTCCGGCAATGCCTTCGTCGGAAATGTTCCGACCCATATCGGAAATTTGACGAGAATCTTATCGTTGGACCTTGGCAACAATCTTTTATCAGGTTCACTCCCATTAACCATCTTTACTGAGCTTAAATCCTTAACTTCTTTGGACATTTCCAACAACTCGTTTTCTGGTTCAATCCCACCTGAAATTGGTAATCTACAGCATTTGACTGACCTTTACATCGGCATTAACCACTTTTCCGGCGAGTTGCCGCCTGGATTTGGCAATCTTGTGTTGCTAGAGAACTTTTTCGCTCCTTCTTGTTCTTTAACTGGTCCATTGCCCGAAGAACTATCCAAGTTGAAATCATTGAGTAAACTGGACCTTTCATACAACCCACTTGAATGTTCTATCCCAAAATCGATTGGTGAGTTACAGAACTTGACCATATTGAATCTGGTTTACACTGACATTAATGGTTCCATTCCTGCTGAACTTGGAAACTGCAAAAACTTGAAAACATTGATGCTTTCATTCAACTCTCTATCTGGGATGTTGCCACAAGAGCTTTCAGAGCTTCCCATCTTGACATTTTCTGCAGAGAAGAATCAGCTTTCTGGGCCATTGCCTTCTTGGCTTGGCAAATGGGATCGTGTTGAATCGATCTTACTGTCGAGTAATCGGTTCACCGGAGAAATCCCACCTGAGATTGGGAATTGCTCAATGCTTAATCACCTCAGTTTGAGAAATAACATGTTAACAGGTTCAATACCTAAAGAGATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGATAGTAATTTCCTTTCGGGTTCGATCGACGACACGTTCGTGCTGTGTAGAAACCTTACACAGTTGGTTTTGGTAGACAATCTGATTGTTGGTGCAATACCTGAGTACTTCTCAGACCTTCCCTTACTCGTAATCAACCTCGACTCGAATAATTTCACCGGTTCGTTACCAAGAAGTATATGGAACTCGGTGAATTTGATGGAGTTTTCTGCTGCAAATAACCAATTGGAGGGTCATCTCCCTTCAGAGATTGGTTATGCAGCTTCACTTCAGAGGCTTGTTCTTAGCAACAATAGGTTGACAGGCACAATACCAAATGAGATTGGAAATCTCACAGCCCTTTCTGTTCTAAACTTGAATTCAAATCTGCTTGAAGGAACTATTCCAGCCATGCTTGGAGATTGTAAAGCTCTTACCACATTGGACCTCGGAAATAACGGTCTAAACGGGTCGATACCGGAAGGACTTGCAGAGCTTGCTGAATTACAGTGCCTTGTTCTTTCGCACAATGAGCTATCTGGAGCAATACCTTCCAAGACATCTGCTTATTTTCAACAAGTGACTATTCCTGATTTGAGCTTTGTTCAACATCATGGTGTTTTTGATTTGTCCCATAATAGATTGTCGGGTAGCATACCTGATGAACTGGGGGAGTGTGTTGTCGTGGTGGATCTTTTACTGAACAATAATCTACTTTCTGGAGAGATTCCTAAATCTCTTTCTCTCTTAACAAACCTGACAACCTTGGATTTGTCTGGCAATATGCTTTCCGGTCCTATTCCCGCAGAGCTCGGCGATGTTCTCAAGCTGCAAGGCCTGTATCTTGGGAATAATCGCCTCACCGGATCGATCCCGGTAAGCCTGAGTCGTTTGAGTAGCTTGGTGAAGTTGAACTTAACCGGTAATAGACTATCTGGTTCAGTTCCAGAAACTCTTGGTGATCTGAAAGCTTTAACTCATTTGGATCTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTTGTCTCTGTCCAACGTGTTGAATCTTGTGGGGCTTTATGTACAAGAGAACAGGCTTTCTGGACAGATTGTAGAGCTTTTCCCAAGCTCATTTACATGGAAGATCGAAGCTTTGAATTTGAGTCGTAACGAGTTCGAGGGCGTTCTTCCACGAGCATTAGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTCCAGATCTTGGGGATCTTATGCAACTTGAGTACTTAGATGTTTCAAATAACAAGCTCTCAGGAGAGATTCCAGAGAAAATATGCAGCCTGTTCAATATGTTCTACCTGAATTTGGCGAAAAACAGTCTCGAAGGACCGATCCCGAAAAGCGGCATTTGCCAGAATCTATCGAAAAGTTCATTTGTTGGGAACAAGAATCTTTGTGGAAGAATCATGGGTTACAATTGCAAGATCAAAAGCATGGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGTGTTCTTATCGTTTTTTCCGTGGCGTTTGCTATGCGAAAACGGATTATTCGAAGCCATAGAGATGATGATCCAGAGGACATGGAGGAAAGCAAACTAAACAGTTTGATGGATCCCAATCTCTATTTCTTAAGCAGCAGTAGATCGAAAGAGCCGTTAAGCATCAACGTGGCGATGTTCGAGCAGCCGCTTCTGAAGCTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGCAAAACAAACATCATTGGAGATGGAGGATTTGGGACAGTGTACAAGGCCACCTTGCCTGATGGGAAAATTGTTGCTGTCAAGAAGCTAAGCCAAGCAAAAACACAGGGGCACAGGGAATTCATGGCTGAAATGGAAACCATAGGCAAAGTAAAGCATCATAACCTTGTTCCATTGCTTGGCTACTGCTCTCTTGGGGAGGAGAAGCTTCTTGTGTACGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGCGAAACCGAACCAGTGCGCTTGAAGTTCTTAACTGGGAGACTCGGTTCAAAGTCGCTTCGGGCGCAGCGTGTGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAGGCAAGTAATATACTACTGAATGAAGAGTTTGAACCAAAAGTTGGTGACTTTGGATTGGCAAGGTTGATCAGTGCTTGTGAGACTCATGTGACAACTGAGATAGCTGGAACGTTTGGTTACATTCCGCCGGAGTACGGGCAGAGCGGGAGATCGACGGCGAAAGGAGACGTTTATAGCTTCGGAGTGATTCTGCTGGAACTGGTAACTGGGAAGGAACCAACAGGACCTGAGTTTAAGGAGATTGAAGGTGGGAATCTGGTTGGTTGGGTGTTTCAGAAGATCAAGAAGGGTCAGGCGGCGGAGGTTCTGGACGTGACGGTTTTGAATGCTGATTCTAAGCATATGATGCTTCAAACTCTAAAGATTGCTTGTGTTTGTCTGTCTGAAAATCCTGCTAACAGACCTTCCATGCTTCAG 3867 43.96 MGMELKRLFLIFFFFFELCILTSNGVSDHNQILLDRESLLSFKALLDTSKTLPWNSLVPHCFWVGVSCRFRRVTELSLSSLSLKGRLSPSLFNISSLSVLDLSNNGLYGSIPPQISNLRSLKVLALDGNQFSGDFPIGLTELTQMENLKLGTNLFTGTIPPELGNLKQLRTLDLSGNAFVGNVPTHIGNLTRILSLDLGNNLLSGSLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPGFGNLVLLENFFAPSCSLTGPLPEELSKLKSLSKLDLSYNPLECSIPKSIGELQNLTILNLVYTDINGSIPAELGNCKNLKTLMLSFNSLSGMLPQELSELPILTFSAEKNQLSGPLPSWLGKWDRVESILLSSNRFTGEIPPEIGNCSMLNHLSLRNNMLTGSIPKEICNAASLMEIDLDSNFLSGSIDDTFVLCRNLTQLVLVDNLIVGAIPEYFSDLPLLVINLDSNNFTGSLPRSIWNSVNLMEFSAANNQLEGHLPSEIGYAASLQRLVLSNNRLTGTIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCKALTTLDLGNNGLNGSIPEGLAELAELQCLVLSHNELSGAIPSKTSAYFQQVTIPDLSFVQHHGVFDLSHNRLSGSIPDELGECVVVVDLLLNNNLLSGEIPKSLSLLTNLTTLDLSGNMLSGPIPAELGDVLKLQGLYLGNNRLTGSIPVSLSRLSSLVKLNLTGNRLSGSVPETLGDLKALTHLDLSSNELDGDLPLSLSNVLNLVGLYVQENRLSGQIVELFPSSFTWKIEALNLSRNEFEGVLPRALGNLSYLTTLDLHGNKFTGPIPPDLGDLMQLEYLDVSNNKLSGEIPEKICSLFNMFYLNLAKNSLEGPIPKSGICQNLSKSSFVGNKNLCGRIMGYNCKIKSMERSAVLNAWSVAGIIIVSVLIVFSVAFAMRKRIIRSHRDDDPEDMEESKLNSLMDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSQAKTQGHREFMAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTSALEVLNWETRFKVASGAACGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVGDFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTAKGDVYSFGVILLELVTGKEPTGPEFKEIEGGNLVGWVFQKIKKGQAAEVLDVTVLNADSKHMMLQTLKIACVCLSENPANRPSMLQ 1289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11318917 11322783 + Carg22087-RA Car18g01139 166841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01139 1289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
Car18g01139 1289 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Car18g01139 1289 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Car18g01139 1289 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Car18g01139 1289 Pfam Leucine Rich Repeat 756 776 IPR001611 GO:0005515
Car18g01139 1289 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515
Car18g01139 1289 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524
Car18g01139 1289 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Car18g01139 1289 ProSiteProfiles Protein kinase domain profile. 1022 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01139 1289 Pfam Protein tyrosine and serine/threonine kinase 1026 1287 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00854 Car-Chr2:6155275 Car18g01139 Car-Chr18:11318917 8.89E-11 dispersed
Car13g00480 Car-Chr13:7044855 Car18g01139 Car-Chr18:11318917 6.42E-07 dispersed
Car15g00289 Car-Chr15:1567658 Car18g01139 Car-Chr18:11318917 1.27E-06 dispersed
Car16g00368 Car-Chr16:2277473 Car18g01139 Car-Chr18:11318917 1.26E-08 dispersed
Car18g01139 Car-Chr18:11318917 Car17g00105 Car-Chr17:653769 2.87E-35 dispersed
Car04g00004 Car-Chr4:12260 Car18g01139 Car-Chr18:11318917 1.94E-18 transposed
Car16g00121 Car-Chr16:709313 Car18g01139 Car-Chr18:11318917 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89546 PF07714 PK_Tyr_Ser-Thr 1.70E-44 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01139 - - csv:101215443 2144.39