Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01154 ATGGCGAACGCGGCATCTGGAATGGCTGTGAGAGATGAGTGCAAGCTCAAGTTTTTGGAGTTGAAAACAAAGAGGAACTATCGTTTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGAAGCCCTACAGAAACCTACGAAGATTTCACTGCTGCTATTCCTCCTAACGAGTGTCGTTATGCTGTCTTTGATTTTGACTTCACCACCGACGAGAACTGCCAGAAAAGCAAGATCTTTTTCATAGCATGGTCACCCGACACATCGATCGTGCGAAATAAGATGGTGTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATGCAAGCGAAATGAGCTTCGACATAATCAAAGCTCGAGCCTTTTAA 414 43.48 MANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPTETYEDFTAAIPPNECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQVELQATDASEMSFDIIKARAF 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11355989 11356661 - Carg22102-RA Car18g01154 166856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01154 137 ProSiteProfiles ADF-H domain profile. 5 137 IPR002108 GO:0003779
Car18g01154 137 Pfam Cofilin/tropomyosin-type actin-binding protein 14 134 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01154 K05765 CFL; cofilin - cmos:111449917 274.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00811 Car18g01154 CCT
Car15g01009 Car18g01154 CCT
Car02g00811 Car18g01154 ECH
Car15g01009 Car18g01154 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00379 Car-Chr15:1983471 Car18g01154 Car-Chr18:11355989 1.24E-75 dispersed
Car14g01837 Car-Chr14:14284348 Car18g01154 Car-Chr18:11355989 1.46E-79 wgd
Car15g01009 Car-Chr15:7888705 Car18g01154 Car-Chr18:11355989 2.62E-79 wgd
Car16g00113 Car-Chr16:678420 Car18g01154 Car-Chr18:11355989 5.53E-87 wgd
Car18g01154 Car-Chr18:11355989 Car02g00811 Car-Chr2:5883479 1.61E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01154 Car_Chr18 FPKM 3.096459 3.835204 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.155699