Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01163 ATGGCCGCTGCCGACGAGATTGGACAGCCGCTGCAATTCGACGTCGAACACACTATATTTGTTGCGGTGGGAACGGATGTCCACGACTCCGAAACCACGCTGATTTGGGCTGTGCAGAACTTCGCTGGGAAGAAATTTTGTGTGCTTCACGTTCATCAGCCTGCCCATCTTGTTGTTCCTCAGAAAAATGAAGAGCCGTCTTCCAATACACCAAAAGAACATGTAACAAAGGCATTTGATGAACCTGAAAGGCAAAAGCCTTTAGAACTTCTTAATCAATATGTTTTCATTCTTGCCAAACTGGGGGTACAAGCGCGAAAAGTATGGACCGAGACGAACAGCGTTGAGAAAGGGATTGTTGAAATTATTTCTCAGTACAGTATTAAATGGCTAGTCATGGGTTTAGACGCAGAAAGATACAATCTCAAGACGTCCAAGAAAGCTTTCTATGTATGCCAACAAGCACCCATATGCTGCCACATTTGGCTTGTCTGCAGAGGGCGCCTTATATTCTCAAGATTCAATCCATCACTGCTGCAAACTACGGAAATAGGATTGGACCAATCTAACCATCTGAGACTGGACTTTGTAGATGCTCAACAAAAGGAGTATGCATCTGATAGATCTCAAGGTCTGGTGGATCCAAAACATTCCAATAATGAAGCCATTGGTACTTCAAGAACAAGACTATTGTTAAGGAATGAGATGAACAAAAAGCGTGACAAGCTCTCGAAAGAACTATACGACGTCGAAGAGCAGAAATTATTTCTTGAAAGAAAAGCTTCAGAGTACCGTTGTGAAGTGAAGGAGTTGGAGAAGAAAATGTTTGATGCTGTTGGCCTCTTGGTAAGCTTCAGGGAAAAACGAGATAAGTTGCAGATAGAACATGAAGAAGCAAAGAACAAGCTTAGACTGCTGAAGAACATGCTTAAAATGGAACCTACATGCTTTCACAGCCTAGATATGCCTACATTCTCATTCATGGAGATAATTGAGGCCACCAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGTAGTGTTTATAAAGGCCACCTTCGCCACGTGGACGTTGCTCTAAAAATGTTGCCTTCGTACGGTTCTCATTCACAATCGACATTCCAATACGAGCGTTCGATAATGTACTTTTTTGGATTTTGTATTGGTGGGGAACAGATTGAAATTTTGAGTAGGGTAAGGCATCCAAACCTGGTTACAATTATTGGGGCATGTCCAGAATCTAGGTTGATAGTCTATGAGAATTTGAAAAATGGCAGCTTGGAAGAGCACCTATCGTGCAAAGATCGATATCGCCCGCTTCCATGGCAGATACGGATTCGGGTTGCTGCTGATATCTGCTCAGCTCTTATATTTCTCCATTACAACGAGCCTTGCATTGTCCATGGAGACATAAAACCAAGCAAAATCCTACTTGATGCCAATTTTGTTGCCAAACTAGGTGGCTTGGGCATCTCTCGCTTGATCCCACGAGAATGTCTTGAGATTGGAAGGTTCACTCCAGAATCAGACGTTTACTCTCTTGGTGTTACTTTTCTGCGTATGTTAACCGGCAGAGCAGCTTCGGGAATTGTAAAAGATGTAAAATGTGCTTTAGAAACTGATAAGATTGGTGCCGTTTTGGACTCATCAGCTGGAGATTGGCCTCATGATCTAGCAGAACAATTGGCTCTTGTGGCTTTGAGATGCTGTGCGAAGGAAAAGTCAGATCGGCCTGACCTCGTCTCGGAATTATGGAGTGTTTTGGAGCCTATGAGATCCATTGCCTCGGCATCGTTTTCAGGTTCGAAGCAACACTCTCGAGTGCCTGCCCATTTCACATGTCCTATTTTTCAGGAAATGATGAAAGATCCACTCATTGCTGCAGATGGGTTCACATACGAAGCTGATGCAATAAAAGGATGGTTCAAAAGTGGGCATGACACTTCTCCCATGACAAATCTTAAACTTGAACACTGTAATCTTGTTCCAAATTATGCTCTTTTGAATGCAATTCAAGAGTGGCAGCTGCAGCTATGA 2046 43.26 MAAADEIGQPLQFDVEHTIFVAVGTDVHDSETTLIWAVQNFAGKKFCVLHVHQPAHLVVPQKNEEPSSNTPKEHVTKAFDEPERQKPLELLNQYVFILAKLGVQARKVWTETNSVEKGIVEIISQYSIKWLVMGLDAERYNLKTSKKAFYVCQQAPICCHIWLVCRGRLIFSRFNPSLLQTTEIGLDQSNHLRLDFVDAQQKEYASDRSQGLVDPKHSNNEAIGTSRTRLLLRNEMNKKRDKLSKELYDVEEQKLFLERKASEYRCEVKELEKKMFDAVGLLVSFREKRDKLQIEHEEAKNKLRLLKNMLKMEPTCFHSLDMPTFSFMEIIEATRNFDPSWKIGEGRHGSVYKGHLRHVDVALKMLPSYGSHSQSTFQYERSIMYFFGFCIGGEQIEILSRVRHPNLVTIIGACPESRLIVYENLKNGSLEEHLSCKDRYRPLPWQIRIRVAADICSALIFLHYNEPCIVHGDIKPSKILLDANFVAKLGGLGISRLIPRECLEIGRFTPESDVYSLGVTFLRMLTGRAASGIVKDVKCALETDKIGAVLDSSAGDWPHDLAEQLALVALRCCAKEKSDRPDLVSELWSVLEPMRSIASASFSGSKQHSRVPAHFTCPIFQEMMKDPLIAADGFTYEADAIKGWFKSGHDTSPMTNLKLEHCNLVPNYALLNAIQEWQLQL 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11394110 11399582 + Carg22111-RA Car18g01163 166865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01163 681 Coils Coil 233 274 - -
Car18g01163 681 Pfam Protein kinase domain 342 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01163 681 ProSiteProfiles Protein kinase domain profile. 337 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01163 681 ProSitePatterns Protein kinases ATP-binding region signature. 343 364 IPR017441 GO:0005524
Car18g01163 681 Coils Coil 282 309 - -
Car18g01163 681 Pfam U-box domain 611 678 IPR003613 GO:0004842|GO:0016567
Car18g01163 681 ProSiteProfiles U-box domain profile. 610 681 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01163 - - - cmax:111467600 1267.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00105 Car18g01163 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00399 Car-Chr17:2644490 Car18g01163 Car-Chr18:11394110 2.24E-27 dispersed
Car18g01163 Car-Chr18:11394110 Car15g01221 Car-Chr15:9532359 2.02E-79 dispersed
Car14g01849 Car-Chr14:14344847 Car18g01163 Car-Chr18:11394110 1.02E-25 wgd
Car16g00105 Car-Chr16:644714 Car18g01163 Car-Chr18:11394110 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89547 PF07714 PK_Tyr_Ser-Thr 5.70E-21 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01163 Car_Chr18 FPKM 20.56492 22.302843 53.492664 52.161591 11.06637 9.709599 11.670736 45.108189 42.514767 46.93108