Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01165 ATGCCTTTATATTTTCTCATACAAACCTTCGTTTATTCTCACTCTGTAGAAAGAAACTCTCCCAAAAAAACTGCTTCTCGCCTCGCCACCGATCACTTTCTCGAATTTTGCAGCCCCTTTTTCTCCGGCCTGACGCTCTATAACTCTTTCCAAATCGGCCCATTTACGATCCGATCTGCCGCCTTCTTTTTTCCTCGCAATCGATCTTTGTCCTTACTGATGCCAGTTGCAAAACTCAAGAATTCTAACTATCCAGATGTGATGAAATCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATTGGCAAAGAGCCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGCCCAGTCCAGTGGATTCAACTACTTCATGCTCTAGATCATCATGAACTCCCAGGTTGGCCCTTGCTATCTCCTTTAAAGGTTCAAATGCAGAAGTGTGACAAGTGTCTCCTGGAATTTTTCTCGTTTATCAACTATAGAAGACATATACGAGTGTATCATAGGATGAAAAAGCCTGATAAGGATTCTGCCAAAACTAGGGATTTACTAGCAGCATTTTGGGACAAGCTATCCTGGGAAGAGACGAAGGAGGCTGTATCATTTAAAAATGGAATGCAAGGGTCAGCCGTTATCAAGAACCTGACGGCCATTATTGGAAAACCGAGATTTTCTGCCCTACCACATGTTTATTTGAGGGCAGGTTCTGCCCTTTTGGACATTGTACAAGGTAGACCGTCTAGGTTTCCCCTCTCTTCGCAGGAGCTATTTGAAATTCTTGACAATGCAAGTGAAAAAACATTCCTATGTGGAACTTCTTTCTCTATGCAAAAATATATATTTGATGGCGGGACTGTAAAGATCGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTTGCTGACAAGGATGCTGAAGCTTTGAGGTGTCAGAAGTTGCTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAAAGAAAAAGGCAGAAGAAGCTAAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACGCGAAGAGAAGGCTGATATGGAAGCGAGTGTAAATGAAACAATTGAAGACGTGTTACCTGAAGAATCATCTAGCCCTCAAACTGAATGCCACTCAGAAGGGGACTCTCTGAGCATATTGGCTGATCACATACCATCATCTATTGAAACATCTCAACAATCTCTAACTGATGAAGAGGAAGATTCTGAGTCTTGTTTTGGGTCTCACAGTGGCTACCCTGAACATCTTCCTATTGATCACAATGGTGAACGGCAGAAAATACAAATGAATGGCCATAAGCATGTAATTGCTCAGTGGCAGGCATTGCCTAAGACGCAAAGGGGACTTTCTAACGGGTATCATTCAGAACAGAATTATCAGGGACACAAAAATGGAGATATGCGAAGGCATGGAAACCATGTGCTTTCAAGGGCTGCGCCCATGGCTAATGGGAAAAAAGTATGGAGCCGGAAGCCCAAACCAGAAAGAGATGGAGGCCGTTACCAAGCCAGGATTCTTGAAGAGACAACGGCCCAAGCGGAGGAAATTAAGAGCCATGAGGTTTTGATTGGTTCTATTTCAGTGGCACTAGGAAATTGCAACCAAGAGAGTAAAAATCCAGTTGGAGCTCCAGATGATTGCCAGGATGGCCATCAAACGCCTAAGAAGATTAATAATCATGTTCAGAAGTTCATTAAGCCAGACTCTGTTCAAACTGCAACAAATCGGGTGATGGTTAAGCTTTGGAGGCCAGTTGGTCGTAATGGAACCAAATATGCAATGCTAGAGCAAAGTGACAATGAAGAATCTGAAGCTGAAGGGATAACTGAAAAGCTAGAAGATGAGGCGCTGCTGAATACATATTCTCCACGATCCTCTTCCTTGGATGGTGACAATGGGGACTTCGGAAACAACAACTCTTTGATCCAGGAAGAGCCTGCGCAATCAGTTGGCCTGGAGTTCTCTAGTCGTGCTGCAAAAGCTTTCCTTGCACAGAGGTGGAAGGAGGCTATAACAGCCGACCACGTCAAATTGAATCTACCCTCCGATTCTGAGTCTTCTCGATGCTCTGAAATTCAAAATGACACAGAAACTTCTGCATTTCAATTGTCCAACTTTGACAGACGCAATGTTCTTGGCAATGCGATGTCAATTAATGTCGACCCTCCCAAGTCGTCCTCAGCCAATGAAGCCGGCAAGTCCAAGTTCAGGACAAAATTTGAAAAGGGTGCGAAGATAAAGTACATTCCCAAACTTCGAACCACTACCTGA 2343 43.66 MPLYFLIQTFVYSHSVERNSPKKTASRLATDHFLEFCSPFFSGLTLYNSFQIGPFTIRSAAFFFPRNRSLSLLMPVAKLKNSNYPDVMKSEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDHHELPGWPLLSPLKVQMQKCDKCLLEFFSFINYRRHIRVYHRMKKPDKDSAKTRDLLAAFWDKLSWEETKEAVSFKNGMQGSAVIKNLTAIIGKPRFSALPHVYLRAGSALLDIVQGRPSRFPLSSQELFEILDNASEKTFLCGTSFSMQKYIFDGGTVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRQKKLRQKEQRSKEQKREEKADMEASVNETIEDVLPEESSSPQTECHSEGDSLSILADHIPSSIETSQQSLTDEEEDSESCFGSHSGYPEHLPIDHNGERQKIQMNGHKHVIAQWQALPKTQRGLSNGYHSEQNYQGHKNGDMRRHGNHVLSRAAPMANGKKVWSRKPKPERDGGRYQARILEETTAQAEEIKSHEVLIGSISVALGNCNQESKNPVGAPDDCQDGHQTPKKINNHVQKFIKPDSVQTATNRVMVKLWRPVGRNGTKYAMLEQSDNEESEAEGITEKLEDEALLNTYSPRSSSLDGDNGDFGNNNSLIQEEPAQSVGLEFSSRAAKAFLAQRWKEAITADHVKLNLPSDSESSRCSEIQNDTETSAFQLSNFDRRNVLGNAMSINVDPPKSSSANEAGKSKFRTKFEKGAKIKYIPKLRTTT 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11403015 11408306 + Carg22113-RA Car18g01165 166867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01165 780 ProSitePatterns Zinc finger C2H2 type domain signature. 151 172 IPR013087 -
Car18g01165 780 MobiDBLite consensus disorder prediction 741 760 - -
Car18g01165 780 Coils Coil 342 381 - -
Car18g01165 780 MobiDBLite consensus disorder prediction 743 757 - -
Car18g01165 780 MobiDBLite consensus disorder prediction 413 432 - -
Car18g01165 780 MobiDBLite consensus disorder prediction 348 398 - -
Car18g01165 780 Coils Coil 619 639 - -
Car18g01165 780 MobiDBLite consensus disorder prediction 348 375 - -
Car18g01165 780 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 177 IPR013087 -
Car18g01165 780 MobiDBLite consensus disorder prediction 381 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01165 - - - cmos:111449426 1490.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00104 Car18g01165 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00104 Car-Chr16:637983 Car18g01165 Car-Chr18:11403015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5224 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01165 Car_Chr18 FPKM 9.831118 10.251704 13.536936 15.69703 3.435031 4.195937 4.812757 16.929537 15.142705 13.95556