Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01170 ATGGCCTCTCGCTACGAAGTGGAAGTGAAAATCCTGTCCGCTAAAGATCTTAAGAACATCAATTGGCGTTACGGTGGCCTGAAACCCTACGCCGTCGTTTGGATTGATCCGAAGAGTAAATCGTCGACGAAGGTCGATGCTGAAGGCGACACGTCGCCGTACTGGGACGAAACGTTAGTCATTCCATTCTCATCGCCGATTGAAGACTCTACGCTTTACATCGACGTGGTCCACGTCGTCTCCGGTGACGAAGACACCAAGCCGCTGATCGGCTCCGCCAAGCTTCACCTCTCTGAGGTCGTCGACGATGTTGGCCTCGGTGAACGCTCTCAGCGGACTCTCCAATTGAAACGGCCATCCGGCAGGCCACAAGGGAAGATCGAAGTTAAAGTAACGGTTCGAGAACCACGTTACCGACCCTCCGATTCTTACTACGCGCCGCCGTATGGGGTCCCACCGCCAGGTACGAACAGGGATTTTTCTGCTCCGCCACCGCCGCAGCCCTATGCTGCTCCGTACTCTGCTCCTCATGATCCTTACTATTCGACGGCCCCGCCGTCCGGATACCCCTATGGCGGGTATAATGCACCGGCGCCGTATGGCCAATCGAATTACGGGCAGCCTTCGTACGGGCAGCCGAGTTACGGGCAGCCAGCGTATGGCGATCAGGTTTACGGGCATCCAGAGGAGAAGAAGAGCAAGTACGGGATGGGGACCGGATTGGCTATCGGTGCCGCGGCCGGAGTCTTAGGTGGATTGGCCTTGGGAGAAGGCGTGGAATACTTGGAGGACAAGATCGCCGAGGACGCGGCGGAGAGGGTGGAGGATGATCTTGGGTACGGCGACGATGATTTCTAG 858 57.11 MASRYEVEVKILSAKDLKNINWRYGGLKPYAVVWIDPKSKSSTKVDAEGDTSPYWDETLVIPFSSPIEDSTLYIDVVHVVSGDEDTKPLIGSAKLHLSEVVDDVGLGERSQRTLQLKRPSGRPQGKIEVKVTVREPRYRPSDSYYAPPYGVPPPGTNRDFSAPPPPQPYAAPYSAPHDPYYSTAPPSGYPYGGYNAPAPYGQSNYGQPSYGQPSYGQPAYGDQVYGHPEEKKSKYGMGTGLAIGAAAGVLGGLALGEGVEYLEDKIAEDAAERVEDDLGYGDDDF 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11439067 11439924 - Carg22118-RA Car18g01170 166872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01170 285 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 134 IPR035892 -
Car18g01170 285 MobiDBLite consensus disorder prediction 146 173 - -
Car18g01170 285 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Car18g01170 285 Gene3D C2 domain 3 143 IPR035892 -
Car18g01170 285 CDD C2_SRC2_like 6 129 IPR044750 GO:0006952
Car18g01170 285 Pfam C2 domain 7 101 IPR000008 -
Car18g01170 285 SMART C2_3c 6 109 IPR000008 -
Car18g01170 285 PANTHER PROTEIN SRC2-LIKE 1 281 - -
Car18g01170 285 PANTHER INGRESSION PROTEIN FIC1 1 281 - -
Car18g01170 285 MobiDBLite consensus disorder prediction 132 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01170 - - - cmax:111467646 496.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00097 Car18g01170 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00119 Car-Chr17:749739 Car18g01170 Car-Chr18:11439067 2.28E-09 dispersed
Car18g01170 Car-Chr18:11439067 Car11g01111 Car-Chr11:8824023 8.44E-06 dispersed
Car16g00097 Car-Chr16:597241 Car18g01170 Car-Chr18:11439067 3.94E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g733 . . . . . . . . . Cmo18g01288 . . . . Sed07g1008 . Cpe14g00093 Bhi01g01270 Tan01g0217 Cmetu06g1400 . Hepe07g0137 . . . . . . . . . . . . . Lsi05g01208 . . Cme06g01023 . . . . . . . . . . . Cma16g00109 Cma18g01261 Car16g00097 Car18g01170 Cpe09g00076 . . . . . . . . Cla05g00900 Cam05g0984 Cec05g0989 Cco05g0987 Clacu05g0972 Cmu05g0929 Cre05g1014 . Csa03g01735 Chy06g00966 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009669 2 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01170 Car_Chr18 FPKM 0.680548 0.684867 0.0 0.0 0.0 0.0 0.0 0.052576 0.0 0.0