Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01173 ATGGTAGTTTCTCTAAGACTACCTTCGCTCTCCTCTTTGCTTTCCCCAGCCTCTCCTTTCACTTTTTCCAGGCGAGCTCTGGGAATTTCATGGCGGCAGCAACGCCCGTTCCGGTTGCCTCTGCTTGCTCCTGGATTATCTGTGCGAAGCTCGTCTACCGGGACCGAAATTCATGTCGACAACTCGAAGAATCGAGTTCCGGAAGGGGCTATCACGCCTCGGTCGCAGGACTTCAATGCTTGGTATTTGGATATTATTGCTAACGCTGAGCTCGCGGATTATGGCCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGCTACGCCATATGGGAAGCAATACAGGAATATCTGAATGTTAAGTTCAAGGAGACTGGCCACGAGAATATGTACTTTCCCCAGTTTATACCCTACTCATTCATTGAGAAGGAAGCGAGTCATGTCGAAGGGTTTAGTCCGGAGTTAGCTCTTGTAACCATTGGAGGTGGGAAAGAACTTGAAGAGAAGCTTGTGGTTCGACCTACGAGTGAAACTATTGTGAATCACATGTTTACACAGTGGATTCATAGTCACCGTGATCTTCCCTTGATGATTAATCAGTGGGCGAATGTTACTAGATGGGAGATGCGGACGAAGCCCTTTGTAAGAACTCTTGAGTTTCTGTGGCAGGAGGGTCATACTGCTCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGAATTTGATGCTGCATTGCAGGCTATTCAGATGATTGACATCTATACAAAATTTGCTTACGAGCAAGCGGCAATACCTGTTATTGCAGGTCGAAAATCAAAGGTGGAGACATTTGCTGGTGCAGACAAGACATATACAATAGAGGCCATGATGGGGGATCGAAAAGCACTTCAGGCAGGAACCAGCCACAACCTTGGGCAGAACTTTTCTCGTGCTTTTGGAACACAGTTCACCGATGAAAATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAATTAGTACACGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCACCAAGGCTTGCTCCAATACAGGTGGTAATCGTACCAATCTGGAAGAAAGAAGGTGTTAAAGCAGAAGTTCTTAATGCTGCTGCTTCTGTAGAAGTAAATCTTCGAACGGCAGGGATAAAGGTTAAACTCGATGATTCTGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAAATGAAGGGCGTTCCTTTGAGGATTGAGATTGGTCCCAAGGATGTTGCAAATCAAAGTGTGGTTATTTCTAGGAGAGATATTCCTGGAAAGCAAGGGAAAGTTTTTGGGATATCCATGGAACCTTCTATTTTAGAAGCTTATGTGAAAGACACGTTGGATGAAATCCAATCATCTCTTCTGGAACAAGCAAAAACTTTTCGTGACAGTAACGTTGTGGATGTGAGTTCATATAATGAACTTAAAGAGGCAATCTCCCAGGGAAAATGGGCTAGGGGTCCTTGGTCAGCTAGGTATGCTTATTTTCATTTCTTGAGTTTTGTAGATAATGATCGTTGTGGATGTATTTTTGTGCATAATTTTGGTTGCTTCTGTATGGTCTTCTTCATCGTATTTGCAGTGACAAAGATGAGTTGA 1650 44.12 MVVSLRLPSLSSLLSPASPFTFSRRALGISWRQQRPFRLPLLAPGLSVRSSSTGTEIHVDNSKNRVPEGAITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHENMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSHRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEEFDAALQAIQMIDIYTKFAYEQAAIPVIAGRKSKVETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAISTRFVGGIIMTHGDDGGLMLPPRLAPIQVVIVPIWKKEGVKAEVLNAAASVEVNLRTAGIKVKLDDSEQRTPGWKFNFWEMKGVPLRIEIGPKDVANQSVVISRRDIPGKQGKVFGISMEPSILEAYVKDTLDEIQSSLLEQAKTFRDSNVVDVSSYNELKEAISQGKWARGPWSARYAYFHFLSFVDNDRCGCIFVHNFGCFCMVFFIVFAVTKMS 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11448750 11453630 + Carg22121-RA Car18g01173 166875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01173 549 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 165 341 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car18g01173 549 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 98 353 IPR006195 -
Car18g01173 549 Pfam Anticodon binding domain 360 439 IPR004154 -
Car18g01173 549 Hamap Proline--tRNA ligase [proS]. 71 547 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01173 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - csv:101217773 904.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01316 Car-Chr14:11155689 Car18g01173 Car-Chr18:11448750 1.51E-107 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01173 Car_Chr18 FPKM 2.495098 5.739741 5.938377 3.893587 0.274121 0.799574 0.850495 1.436793 2.994089 2.762016