Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01193 ATGCTATGTAGAACAGTACCCAAGTTTGTCAATATAAATGAACTCTACCGTCTGGAAGAAGGCTGCTCTCAGCTCATTTCAATCTGCAATTCCAAATCCTTAAAAGAGGGCGTCTGTGTTCATAGCCCGATTATCAAGCTCGGTCTTCTTGGTAATTTGTATCTCAGCAATAATTTGCTATCTCTTTATGCAAAACGCTTTGGACTCAAACAAGCACGTAACCTGTTCGATGAAATGCCTGACAGAGATGTGGTGTCCTGGACTACAATGCAGGCTGCTTATGTTAGGCACGGAAACTACAATGATGCTTTTGAATTGTTTGATCTGATGACAACATTGGGAAATTCTCCAAATGAGTTCACACTTTCGACTTTGATCCGATCGTGCTCCGAAACTAGAGAGTTGAAGCTTGGAAGTTGCGTCCATGGCTATGCCATCAAGGGTGGCTTTGAGTCAAAGCCAGTTCTGGGCTGCACCTTGATTGATTTGTATGCAAAGTGTGATTGTACTAAGCAAGCTTATGAAACTTTTAGGAACATGGATGATGCCGATACCGTTACTTGGACGACGATGATTTCTTCGTTAGTGCAAGCACAGAAATGGGCTGAGGCTCTCCAATTATACATCACCATGTTAGAGTCTGGGGTGGCTCCTAATGAGTTCACCTTTACCAAACTTTTAGCAACGACGAGTTTTATGGGTTTGAAATATGGGAAGTTACTCCATAGTCATTTGATATCATTGGGAGTCAATCTGAATGTCGTTCTAAAGACGGCCCTCGTCGATATGTACTCTGGATACCAAGAGTTAGAATATGCTATCAAGGTAGCAAATCAAACGCCTGAGAAAGATGTGTTTTTGTGGACATCTATTATCTCCTGCTTCAATCAAAATTCAAAGGTCAAGGAGGCTATTGCCGCATTTCAAGAGATGAGGATGTCTGGGATTCCACCCCACAGTTTCACATATTCCAGTGCTTTAAGTGCCTGCACATTGCTACCATCACTTGAATTAGGCAAGCAAATCCACTTGCAGGTAATCTTGGCTGGTTTGGAGGCTGATGTTTGTGCTGGGAGTGCACTAATTAATATGTACATGAAATCTGACTTGATAGATGATGCCTTGAGAGTGTTCGGGTCGATAGCTACCCCGAGTGTTATTTGTTGGACTTCTTTAATATCTGGTCTTGCTGAGCATGGTTTTGAACAAGATTGTTATAGATATTTTCTAGATATGCAAGCAGCCGGAGTGCAGCCGAATTCCTTCACTCTTTCTAGCATTCTTGGCGCCTGCAAAAATCAAATATCCATGTTCCATGGATATATACTAAAATCGATGGCTTACCACGATATCGTTGTAGGGAACGCTCTTGTGGATGGGTATGCTCGATCCGGGATGGTGGATGATGCTCGGCGAGTGATTAGAACTATGAAGCATCGGGATCCCATCACTTATACTAGCTTAGCCACGAGATTGAATCAAATGGGTGATCATGAAATGGCACTAAAAACCATTGATTCCATGCGTGCTGACAATGTCAAGATGGATGAAATTAGCTTGGCAAGCTTGGTATCTGCAGCAACTGGGGTAGGCACAATTGAAACTGGGAAACAACTTCACTGCTATTCTTTGAGATATGGCTTAGACAATACGCGTTCAGTTAAAAATAGTTTGGTGGACTTTTATGGCAAGGTTGGATGCTTGAAGGATGCCTGCAAAGCTTTTGAAGAAATAACAGAGCCCGACGTTGTTTCTTGGAATGGATTGATATCTATATTAGCGCTCAACGGGCATATCTCCGCCGCGCTCTCTGCCTTCGATAACATGAGGTTAGCTGGTTTGAAGCCTGATTCTATCACATTGCTATCAGTACTTTCAGCTTGCAGTCAAGGTCGTTTGGTTGATTTTGGCATGCATTATTTCCAAACTATGAGAGAAACTCACAATATAGAACCGGCGTTGGATCATTATGTTTGTGTTATTGATCTCCATGGCCGCGCTGGGCAGCTAGAGAAGGCAATGGAAATTGTGGAAGCCATGCCATTTGAGGCAGATGCCAAGGTCTACAAGACATTGTTAAGCGCCTGCAAATTGCATAGGAACGTGCTGCTTGGAGAAGATGTGGCAAGAAGAGGACTTCAACTTGACCCATATGATTCATCTTTCTATTTGTTACTGGCTAGCTTGTACGATGAACTCGACCGACCCGATTTAAGCACGAAAACTCGTAAGCTAATGCAAGATCGTGGAATGAGAAAGAGTCCTAGCCAGAGCTGGGTAGAATTAAGCGGTAAGATTCATGTCTTCATCACAGGAGATAGATCACACCCTGAGATGAATGATATGGAAGAAAAGTTAGAGTTCCTGAGAGCTGAGTTCAAGAGTAGGGGCTTTTTGTATGGTGACGATGAAGATTCATGTCATCATAGTGAAAAATTAGCTCTTGCATTTGGTCTCGTCAGGATGCCTCCAAAAGGTGTTGTACGTATAATGAAGAACATAAGCATTTGCAGAGAATGTCATGACTTCATATTGCTTGCAACAAAGGTAGTAGAGAGGGAAATTGTTGTGAGAGATGGGAGCAGACTCCATGTGTTCAACAATGGAAGCTGCTCTTGCAAGCACTACCCATGA 2634 42.79 MLCRTVPKFVNINELYRLEEGCSQLISICNSKSLKEGVCVHSPIIKLGLLGNLYLSNNLLSLYAKRFGLKQARNLFDEMPDRDVVSWTTMQAAYVRHGNYNDAFELFDLMTTLGNSPNEFTLSTLIRSCSETRELKLGSCVHGYAIKGGFESKPVLGCTLIDLYAKCDCTKQAYETFRNMDDADTVTWTTMISSLVQAQKWAEALQLYITMLESGVAPNEFTFTKLLATTSFMGLKYGKLLHSHLISLGVNLNVVLKTALVDMYSGYQELEYAIKVANQTPEKDVFLWTSIISCFNQNSKVKEAIAAFQEMRMSGIPPHSFTYSSALSACTLLPSLELGKQIHLQVILAGLEADVCAGSALINMYMKSDLIDDALRVFGSIATPSVICWTSLISGLAEHGFEQDCYRYFLDMQAAGVQPNSFTLSSILGACKNQISMFHGYILKSMAYHDIVVGNALVDGYARSGMVDDARRVIRTMKHRDPITYTSLATRLNQMGDHEMALKTIDSMRADNVKMDEISLASLVSAATGVGTIETGKQLHCYSLRYGLDNTRSVKNSLVDFYGKVGCLKDACKAFEEITEPDVVSWNGLISILALNGHISAALSAFDNMRLAGLKPDSITLLSVLSACSQGRLVDFGMHYFQTMRETHNIEPALDHYVCVIDLHGRAGQLEKAMEIVEAMPFEADAKVYKTLLSACKLHRNVLLGEDVARRGLQLDPYDSSFYLLLASLYDELDRPDLSTKTRKLMQDRGMRKSPSQSWVELSGKIHVFITGDRSHPEMNDMEEKLEFLRAEFKSRGFLYGDDEDSCHHSEKLALAFGLVRMPPKGVVRIMKNISICRECHDFILLATKVVEREIVVRDGSRLHVFNNGSCSCKHYP 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11516910 11519543 - Carg22141-RA Car18g01193 166895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01193 877 Pfam PPR repeat 359 379 IPR002885 -
Car18g01193 877 Pfam PPR repeat 483 512 IPR002885 -
Car18g01193 877 Pfam PPR repeat 556 579 IPR002885 -
Car18g01193 877 Pfam PPR repeat 455 480 IPR002885 -
Car18g01193 877 Pfam PPR repeat 657 680 IPR002885 -
Car18g01193 877 Pfam PPR repeat family 184 227 IPR002885 -
Car18g01193 877 Pfam PPR repeat family 384 432 IPR002885 -
Car18g01193 877 Pfam PPR repeat family 283 330 IPR002885 -
Car18g01193 877 Pfam PPR repeat family 581 628 IPR002885 -
Car18g01193 877 Pfam PPR repeat family 82 129 IPR002885 -
Car18g01193 877 Pfam E motif 699 761 IPR046848 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Car18g01193 877 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Car18g01193 877 Pfam DYW family of nucleic acid deaminases 807 876 IPR032867 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01193 - - - mcha:111011682 1470.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01193 Car-Chr18:11516910 Car18g01137 Car-Chr18:11304778 2.09E-16 dispersed
Car18g01193 Car-Chr18:11516910 Car17g01117 Car-Chr17:8612112 2.30E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01193 Car_Chr18 FPKM 16.344496 16.058023 11.056586 11.209422 13.756186 13.63296 13.785188 10.960008 11.816759 11.778337