Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01201 ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTCAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAGCCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTAACAGAAGTTATAGAAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTACTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCGTACAATTTGGAAGACAAAGCAGATACCAATGAGGATTCCGATGATACCCAATCGGAAAAAAGTGGGCAAAGAAGTACCAGATCATCAGGGCACAAAATCATGGCAAATAATTCTGAAGATAAATCAGATAAATGCGAGGATTCCGAGGTCTCCCAACTCGAAAAGAGTGGCAAAAGAAGTACTAGATCAGCAAGTAAAGGTTTGGTTTTCGGAAGAAGTAACTCGGACATTGGCTTTGCCACATTGTTTATTAGAAGTATCCATAGCATTTTGACTAAGAAAAAACAAGGGAGCTTTCAGGTAATTGTCAGTCTTAGCTCTCTCTCTCTCTCTCTC 999 44.24 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYRRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVTLLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDALVFHLTKPTEFKVYIIRAYNLEDKADTNEDSDDTQSEKSGQRSTRSSGHKIMANNSEDKSDKCEDSEVSQLEKSGKRSTRSASKGLVFGRSNSDIGFATLFIRSIHSILTKKKQGSFQVIVSLSSLSLSL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11602215 11609774 + Carg20369-RA Car18g01201 166903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01201 333 MobiDBLite consensus disorder prediction 32 47 - -
Car18g01201 333 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Car18g01201 333 Coils Coil 6 33 - -
Car18g01201 333 MobiDBLite consensus disorder prediction 31 88 - -
Car18g01201 333 MobiDBLite consensus disorder prediction 255 280 - -
Car18g01201 333 MobiDBLite consensus disorder prediction 229 280 - -
Car18g01201 333 Pfam B3 DNA binding domain 131 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00470 Car-Chr4:2661912 Car18g01201 Car-Chr18:11602215 9.73E-42 dispersed
Car12g00498 Car-Chr12:3133682 Car18g01201 Car-Chr18:11602215 1.82E-65 dispersed
Car18g01201 Car-Chr18:11602215 Car09g00166 Car-Chr9:827345 6.82E-07 dispersed
Car18g01201 Car-Chr18:11602215 Car19g00463 Car-Chr19:6314735 1.20E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5225 PF02362 B3 1.10E-17 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01201 - - bhj:120077841 459.529