Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01206 ATGGCTGTAGGTGCTTCTTCGTCGTCTCGTGATGGCTCGTGGGTTATGTTCGCTTTGGCTGTTGTATGGCTGATTCGGGCTTGCATGGCTAGCCAAATTGTAATTGGAGCGAGGTTGGTTGCTAGTGATCGTGAGAGAAACACTTGGGTTTCTGATAATAGTACTTTTGCGTTCGGGTTTAGTTCGGCTAGTAGTGGCGCGGTTGATCGATTTCTACTTACCATATGGTTCGCCAAGCTTCCCGGGGATCGAACCGTGGTTTGGTCAGCTAACAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGTTTGATGCCACCGGAAACCTCGTCCTTTTGGACGGTGGCGCCACCGTCTGGTCTTCCAACACCTCCGGAGACGGAGCGGAGTTCGCCGTCATGTCAGAATCTGGCAATTTCATCCTCTTCAACGCCGAGCGAATCCCTATTTGGCAAAGCTTTTCACACCCATCTGATACGCTTCTCCCAAATCAACCTCTATCAGTGTCTTTAGAGCTTACAACTTCAAAATCCCTCTCCCATGGCGGATATTATGCCCTTAAAATGCTCCAACAACGCACCACTCTCAAACTCGCCTTGACATTCAATTTGCCTGAAAATTATGCGGGGTTGCCCGAATCTTACTCAAATTACTCCTACTGGTCCGCCCCTGCCATTTCCAATGTAACAGGGGAAGTCATCGCTGTTCTAGACGAAGGCGGAAGCTTCGGTGTGGTCTATGGCGACTCCGCTAATGGCGCTGTGTATGTTTACAAGAACGATAACGACAATGGGGGATTGTCGGCGTCGACAAATCAGTCGATTCGCAATGTACGCACGCAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGACGATGATGTTAATGGGTCTCGCCAATGGGTGCCGGAATGGGCGGCGGTTTCAAATCCTTGTGATATTGCCGGAATCTGTGGAAATGGGATTTGCTATTTGGATAGAAGTAAGACGAATGCGACTTGTTCTTGCTTGCCGGGGACTTTTAAGGACGCCGGTGGTAGCCAGTGCTTTGAGAATTCATCGTCGGTGGGTAAATGTGATGGCCAACATCATCAATCTCCGGCGACCCAGTTCAGGATTTCTCCAGTTCAGCAAACAAATTACTATTACTCTGAGTTCTCTGTTATTGCAAATTACAGTGATATCGACACTGTTGCCAAATGTGGCGATGCTTGCTTGTCTAATTGTGAGTGTGTTGCCTCTGTTTATGGGCTTGATGAAGAGAAACCTTATTGTTGGGTGTTGAGAAGCTTAGATTTTGGTGGGTTTGAGGATGCTGGTTCGACTCTGTTTGTGAAGGTTAGGTCCAATGGATCAATACCAGATGCCAATGGGCCAAGAACTGATGGAGATTCTTCAGGAAGTGCTAAACAAAAGGCTACAATTATTCCTATTGTTTTGAGTATGGCTTTTCTGATTGGGTTGCTGTGTTTGTTGTTATATTATAATGTTCATAGAAGAAAGGTTTTAAAGAGAGCCATGGAGAGCTCTCTGATCTTGTCTGGAGCTCCTATGAGCTTCACACACCGCGATTTGCAGATCCGAACGAACAATTTCTCCGAGCTTCTTGGAACAGGTGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTGGTAGCTGTGAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAACACTATTGGATCTATGCATCACATGAACCTGGTTCGCCTCTGCGGATACTGCTCGGAAGGGTCGCATAGGCTTCTGGTGTATGAATTCATGAAAAATGGGTCTGTGGACAAATGGATATTTCCTTCACATCATAACCAAGACAGGATTTTAGATTGGTCGACTCGGTTTCACGTAGCCATCGGCACGGCGCAAGGGATCGCTTATTTTCATGAACAATGCAGAAACAGGATCATACATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTCTGCCCCAAAGTTTCGGACTTTGGTCTGGCTAAGCTGATGGGACGAGAGCACTCGCACGTCGTAACGATGGTGAGAGGGACGAGAGGGTATTTGGCTCCGGAGTGGGTTAGTAATCGCCCCATCACGGTTAAAGCTGATGTTTATAGCTATGGAATGCTTCTCTTGGAGATTGTTGGTGGTAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCATACAAGGAGATGAAGAATGGAACTCATTTCAAAGTGGCAGATAGGCGGCTAGAGGGTGCAGTGGATGGAGAAGAGCTAATGAGAGCATTGAAAGTTGCATTTTGGTGCATACAAGATGAAGTTGTGATGCGACCGACGATGGGCGAGGTCGTGAGAATGTTGGAAGGATCGAGTGAGGTCGAGACGCCGCCAATGCCACAAACAGTGGTGGAGATGGTTGAAGAAGGCTTGGATCAAGTTTATAGAGCCATGAAAAGAGATATCAATCAGTCAAGTTCCTTCACCATTAATACCCAACCTTCTTCATCTTTGGCTACCTGCAGTCATTCCACAATCTCTCCAAGATAG 2616 46.44 MAVGASSSSRDGSWVMFALAVVWLIRACMASQIVIGARLVASDRERNTWVSDNSTFAFGFSSASSGAVDRFLLTIWFAKLPGDRTVVWSANRNSPVSKNAIVEFDATGNLVLLDGGATVWSSNTSGDGAEFAVMSESGNFILFNAERIPIWQSFSHPSDTLLPNQPLSVSLELTTSKSLSHGGYYALKMLQQRTTLKLALTFNLPENYAGLPESYSNYSYWSAPAISNVTGEVIAVLDEGGSFGVVYGDSANGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDRSKTNATCSCLPGTFKDAGGSQCFENSSSVGKCDGQHHQSPATQFRISPVQQTNYYYSEFSVIANYSDIDTVAKCGDACLSNCECVASVYGLDEEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPDANGPRTDGDSSGSAKQKATIIPIVLSMAFLIGLLCLLLYYNVHRRKVLKRAMESSLILSGAPMSFTHRDLQIRTNNFSELLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSVDKWIFPSHHNQDRILDWSTRFHVAIGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMKNGTHFKVADRRLEGAVDGEELMRALKVAFWCIQDEVVMRPTMGEVVRMLEGSSEVETPPMPQTVVEMVEEGLDQVYRAMKRDINQSSSFTINTQPSSSLATCSHSTISPR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11640558 11644430 + Carg20364-RA Car18g01206 166908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01206 871 Pfam S-locus glycoprotein domain 273 347 IPR000858 GO:0048544
Car18g01206 871 Pfam Protein kinase domain 541 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01206 871 ProSiteProfiles Protein kinase domain profile. 538 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01206 871 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Car18g01206 871 MobiDBLite consensus disorder prediction 849 871 - -
Car18g01206 871 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Car18g01206 871 Pfam D-mannose binding lectin 85 175 IPR001480 -
Car18g01206 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01206 - - - bhj:120087538 1576.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00401 Car-Chr9:2225257 Car18g01206 Car-Chr18:11640558 6.41E-144 dispersed
Car15g00518 Car-Chr15:2806904 Car18g01206 Car-Chr18:11640558 1.22E-147 dispersed
Car15g00838 Car-Chr15:4824438 Car18g01206 Car-Chr18:11640558 5.20E-105 dispersed
Car18g01206 Car-Chr18:11640558 Car19g00748 Car-Chr19:8338962 6.48E-146 dispersed
Car18g01206 Car-Chr18:11640558 Car12g00321 Car-Chr12:2062608 1.67E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g816 . . . . . . . . . Cmo18g01317 . . . . . . . Bhi01g01427 . . . . . . . . . . . . . . . . . . . . Cme06g01057 . . . . . . . . . . . . Cma18g01288 . Car18g01206 . . . . . . . . . Cla05g00933 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89551 PF00069 Pkinase 2.20E-45 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01206 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0