Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01209 ATGATTATCCGACCCTCTGAAATTCCAACGCCATCATTGCCACAACCCAGAACGTACGGAGCTTTTTCCAACTGTTTCCCTTCTGGGTTCCATACTTTCCTTAGCTTCCAATTCAATTCTCCCGTGTTTCCCCCTTTCCCCTGCGAATTGGGTCGTTCAGAATATTGTAATCAGAGCTCTGTTTCGATTGGTCTCGTGGGGATTTTGAAAGCGATAATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCATTGCTTGATTTCTTCCATAATATCCCTCACTCGCCTTCTCTCAATTGGAATGAGAGTAGTTCTGTGTGCAAAGGCTGGGCAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTAGTAGCCATTCGATTACCGGCGACCGGTCTGCTCGGTCCGATTCCTGTCAATACTCTTAGCCGCCTATCTGCACTTGAGACTCTAAGCCTTAGATTAAATAGGATATCAGGGCCTTTCCCTTCTGATCTTTCCCAGCTGGAAAACTTGAGTTCCTTATATTTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTGGACTTTTCAGTTTGGAGGAACCTTAGTGTCCTTGATCTATCTAACAATCTCTTTAATGGGAGCATTCCTTCTTCAATCTCAAACTTGACCCATCTGACTGTTCTGAATCTTGCAAACAACTCGTTGTCGGGCGAATTTCCCGACCTTGATATTCCGAGTTTGCAATGGTTAGATTTGTCTAACAATAGTCTTACAGGAAATGTGCCTCATTCTCTTACAAGATTTCCAAGTTGGGTGTTCTCCAATAACAATATTACCGTAGAACACGGTGCAATTCCCCCGTCTTTTCCGCTCCAGCCTCCCGGTTCTCGACCGACACGAAAAGGAAAAGGACTAAGTGAATCTGCTATATTGGGTGTTGCAATTGGTGGTTCTGTTGTTGGATTAATTTTGGTAGCAGTTTTGATGACTGCTTGCTGGTTGAAAAGGGTAAAAGAAAATGGTAGTTCCACTATGGAGTCCAAAAAGAAGGAAACATCTGTGAACAAAAGGGGATTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTCATGGATTCTAATCTTGCATTTGATTTGGAAGACCTGTTGAGAGCGTCTGCCGAGGTTCTCGGGAAGGGAACCTTCGGAGTGAGCTACAAGGCAACGTTGGAGGACTCGACGATTGTGGTAGTGAAGAGGCTGAATCAAGTGACGGTTGGAAAACGAGAATTCGAACAGCAGATGGAGTTAATTGGAAACATTAAGCACGAGCACGTCGTTTCGCTAAGAGCATACTATTATTCAAAGGACGAGAAGCTTATGGTCTATGATTACTATGGACAAGGGAGTGTTTCTGCAATGTTACACAGTAAAGAAGGAAATGGTTTACCGTTATTAGATTGGGATAGTCGGATGAAAATTGCGATCGGAACGGCTCGAGGTCTTGCTCATATTCACACAGAAAACGGTGGAAAATGTTCACATGGAAACGTGCGAGCCTCAAACATTTTCCTAAACTCTAAAGGGTATGGCTGTGTATCTGATGTTGGTTTGTCTGTGTTGATGAATTCTATTCCGGTACCAGCCACGAGAACGGTTGGATACCGAGCCCCTGAGGTGACCGACACTCGGAGAGCATCAGAAGCAGCGGATGTGTACAGTTTCGGGGTAGTGCTGCTGGAACTCCTGACTGGAAAGTGTCCCATACATGTTGAAGGTGGTAATGAAGTGGTTAACTTGGTGAGGTGGGTGAAGTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTGAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGGAGAGGCCGAAGATGATGGATATCGTGTCGAGAATCGAGCAAGTTTGGCGAATGAGCACCGGAACGGGACCATCATCTGGATCAAGATCGGCTCATTCTACTCCAGTTCGTGTAATGGAAATCGGTTCGTCCTCATATTCACATTGA 2061 44.98 MIIRPSEIPTPSLPQPRTYGAFSNCFPSGFHTFLSFQFNSPVFPPFPCELGRSEYCNQSSVSIGLVGILKAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKGWAGVFCNSDESRVVAIRLPATGLLGPIPVNTLSRLSALETLSLRLNRISGPFPSDLSQLENLSSLYLQYNEFSGPLPLDFSVWRNLSVLDLSNNLFNGSIPSSISNLTHLTVLNLANNSLSGEFPDLDIPSLQWLDLSNNSLTGNVPHSLTRFPSWVFSNNNITVEHGAIPPSFPLQPPGSRPTRKGKGLSESAILGVAIGGSVVGLILVAVLMTACWLKRVKENGSSTMESKKKETSVNKRGFESQEQKNNLNFFMDSNLAFDLEDLLRASAEVLGKGTFGVSYKATLEDSTIVVVKRLNQVTVGKREFEQQMELIGNIKHEHVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHSKEGNGLPLLDWDSRMKIAIGTARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLSVLMNSIPVPATRTVGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKCPIHVEGGNEVVNLVRWVKSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEERPKMMDIVSRIEQVWRMSTGTGPSSGSRSAHSTPVRVMEIGSSSYSH 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11665514 11668130 + Carg20361-RA Car18g01209 166911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01209 686 ProSiteProfiles Protein kinase domain profile. 382 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g01209 686 Pfam Protein tyrosine and serine/threonine kinase 386 649 IPR001245 GO:0004672|GO:0006468
Car18g01209 686 Pfam Leucine rich repeat 196 254 IPR001611 GO:0005515
Car18g01209 686 MobiDBLite consensus disorder prediction 281 300 - -
Car18g01209 686 Pfam Leucine rich repeat N-terminal domain 83 119 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01209 Car-Chr18:11665514 Car07g01169 Car-Chr7:7070982 0 dispersed
Car15g01139 Car-Chr15:8984359 Car18g01209 Car-Chr18:11665514 0 wgd
Car16g00071 Car-Chr16:459309 Car18g01209 Car-Chr18:11665514 0 wgd
Car18g01209 Car-Chr18:11665514 Car02g00906 Car-Chr2:6443214 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89552 PF07714 PK_Tyr_Ser-Thr 4.20E-33 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01209 - - csv:101207123 1038.1