Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01228 ATGGGGTGCCGCCGCCTCAATGAAACCCACCCTGCTGCCAACCCAAGGAGAGGACCACTTTCCGTTCTCTCTCTTCTGTCCCTCATTCTCATCCTCCCCGCCGTCTCCCCCACTTCACTCCTCGGACTCCGAACCTCTTCCGACCCGAAACTCCCTCGAAAACCGACCCGGGCAATTTCCAAGGCCTGTGCCCGAAGTCGGCTCCCGGCTCTGTGCGTGGACTCGCTCCTGGATTTCCCTGGATCTCTGAGCGCCAACGAACGAGATCTCGTTCACATTTCCTTCAATTTGACTCTCCACCATCTCAATGAAGCCCTCTACTCATCCTCCCACCTTTCCTCTCTTCATATGGATCTTCCCCTTCGCTCCGCCTACGACGCCTGTCTTGAACTCCTCGATGATTCCGTCCATGCCCTAACCCGCTCTTTTCACTCCCTTGCGCCGCCTTCCTCCGACAGCCGCCCAACTCCCCTCGCCTCCTCCTCCTCCTCCTCCTCCGATGACGTCATCACCTGGCTCAGCGCCGCCCTCACCAATCAAGACACCTGTACGGACGGATTCTCCCAACTCAGCGGCAATGTTAAAGATCAAATGACTGACAAACTCCACAATTTGTCTGAGCTTGTGAGCAATTGCCTGGCGTTGTTTTCCGGTAGCGTAAGGAACGACTTTTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGCCGAGAAGGAGGATGATTCTGGTAACTTCCCCGGGTGGATGAGCCGGAGAGAGAGGCGGTTGCTGACGTTGCCGGTTGGGGCGTTGCAGGCCGATATTGTGGTTTCGAAGGACGGGAATGGAACGGTAAAGACGATCGCCGAAGCGATAAAAAAGGCACCGGAATTCAGTACCAGAAAGACGATCATCTACGTGATGGCAGGAAGGTACGAGGAGAAAAACCTGAAGGTAGGGAGGAAGAAAACGAATCTGATGTTTGTTGGGGATGGGAAGGGTAAAACTGTGATTTCGGGCGGTAAGAGTATCTTTGACAACGTGACAACCTTTCACACGGCGTCGTTTGCCGTCAGCGGCGCCGGTATCATTTTGAGGGACATGACATTTGTGAATTGGGCCGGACCGGCTCGGCACCAGGCGGTGGCCCTCCGAGTCAGCGCCGATCACGCCGTCGTGTACCGGTGCAACGTCATCGGGTATCAGGACACTCTCTACGTGCATTCGAACCGGCAATTCTTTCGGGAGTGCGACATTTACGGGACGGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAAAACTGCAGCATTTACGCCCGAAAGGCGATGGAGCTTCAAAAGAACACAATCACGGCTCAGAACCGGAAGGATCCGAATCAGAACACTGGAATTTCCATCCACGCTTGCCGGATTTTGGCCACCCCCGATCTGGCGTCGTCCTCAACTGCCACCAACCCAACGTATCTGGGTCGTCCCTGGAAACTATACTCTAGAGTTGTGTACATGCAGTCATACATGGGGGGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACCTTGTATTACGGTGAGTATATGAACTATGGGCCGGGTGGGGCAGTGGGCCAGAGGGTGACCTGGCCTGGATATCGGGTCATAACGTCGAGGGTGGAGGCAAGTCAGTTCACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGCTACCGTCCACCGGAGTGGCTTTCCTGGGAGGGCTAAATCTGTAA 1758 55.69 MGCRRLNETHPAANPRRGPLSVLSLLSLILILPAVSPTSLLGLRTSSDPKLPRKPTRAISKACARSRLPALCVDSLLDFPGSLSANERDLVHISFNLTLHHLNEALYSSSHLSSLHMDLPLRSAYDACLELLDDSVHALTRSFHSLAPPSSDSRPTPLASSSSSSSDDVITWLSAALTNQDTCTDGFSQLSGNVKDQMTDKLHNLSELVSNCLALFSGSVRNDFSGVPIQNKRRLMNAAEKEDDSGNFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEFSTRKTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAVSGAGIILRDMTFVNWAGPARHQAVALRVSADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKAMELQKNTITAQNRKDPNQNTGISIHACRILATPDLASSSTATNPTYLGRPWKLYSRVVYMQSYMGGHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSRVEASQFTVAQFIYGSSWLPSTGVAFLGGLNL 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11816241 11818504 + Carg20342-RA Car18g01228 166930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01228 585 MobiDBLite consensus disorder prediction 145 164 - -
Car18g01228 585 Pfam Pectinesterase 270 568 IPR000070 GO:0030599|GO:0042545
Car18g01228 585 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Car18g01228 585 Pfam Plant invertase/pectin methylesterase inhibitor 58 215 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car15g00960 Car18g01228 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01016 Car-Chr17:8060470 Car18g01228 Car-Chr18:11816241 4.34E-160 dispersed
Car18g01228 Car-Chr18:11816241 Car14g01771 Car-Chr14:13895966 7.36E-128 dispersed
Car15g00960 Car-Chr15:7028201 Car18g01228 Car-Chr18:11816241 0 wgd
Car16g00047 Car-Chr16:328292 Car18g01228 Car-Chr18:11816241 0 wgd
Car18g01228 Car-Chr18:11816241 Car02g00926 Car-Chr2:6557197 4.43E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01228 - - csv:101214987 927.932