Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01232 ATGGGGAGGGCGGTGGTTTATGTTCTTATACTCGCCGCCTTCGCTGCTTTCTTCGTATTTTCTCCGTCCCATCTCCCCGATCGGAACCGTCAAGAACTAACTCGTCGCCTAGGTTACAGATTCCGAACCCCCACTTTTGATCCTCTTGTGGCAGAATTGGAAAGAATCGCAGAGGAACGTGAGTTGGGAAGCCGAGGAAACGCGATTGGAGTGGAACAAACTGCGAAGGCAAAGATTCCCGAGGCTTACAGAGATTCCAACGACGAAGGGAGATTGAACATTTCGTCGAGGTTGGTCGTATTGTTTCCTTTGGTGGACCACTCCCCAACAGATGGGCTTATCAACTACGAGGAGATGAGCAATTGGATTACTGAGCAAACCGTCAACAAATTGAACAACAGAACGGGGAGAGAGTTAGCGTTCTACGACAAGAACGGAGATGGCGCCATATCTTTCCACGAATATCTGCCGCAGTTTACAGAGGAAGATATTGCTAGAAACGAAACGGGGCATGGACAAGCTGGATGGTGGAAACAGCAATTCACAAATGCTGATGTTGACCCAAATGGATTGCTCAGTTTTGATGAACTGAAAGATTTCCTGCACCCACAAGACAGCAGCAATTACCGAATACAAAACTGGCTGTTGAGCGAGAAAATGAAGCGCATGGACTATGACAGAGATGGAAAACTCAGTTTTGATGAATTCCTCCACCACGCATACGACATATACAAGAGCTATATTGAATTCGAAACTCAAGGGGACGACGTACCGACCGCGGAAGAGAAATTTGATGAGCTTGATCTTGATGAGGATGAAGTATTGACAGTGGAAGAATTAAGGCCATTATTCCAGTATCTTAATCCTGGAGAACTTTCTCATGCCCAACATTACGCAGCTCATTTGATTAAGGAGGCTGATGATAACAAGGATGGGTTCTTAACACTCGAGGAGATGCTTAAACACGAGTACGTATTCTACACCACACTATATGAAAATCAAAATGGCGACTATGAAGACGATTTCCATGATGAACTTTGA 1041 45.34 MGRAVVYVLILAAFAAFFVFSPSHLPDRNRQELTRRLGYRFRTPTFDPLVAELERIAEERELGSRGNAIGVEQTAKAKIPEAYRDSNDEGRLNISSRLVVLFPLVDHSPTDGLINYEEMSNWITEQTVNKLNNRTGRELAFYDKNGDGAISFHEYLPQFTEEDIARNETGHGQAGWWKQQFTNADVDPNGLLSFDELKDFLHPQDSSNYRIQNWLLSEKMKRMDYDRDGKLSFDEFLHHAYDIYKSYIEFETQGDDVPTAEEKFDELDLDEDEVLTVEELRPLFQYLNPGELSHAQHYAAHLIKEADDNKDGFLTLEEMLKHEYVFYTTLYENQNGDYEDDFHDEL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11827859 11829377 + Carg20338-RA Car18g01232 166934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01232 346 ProSiteProfiles EF-hand calcium-binding domain profile. 220 246 IPR002048 GO:0005509
Car18g01232 346 Pfam EF-hand domain pair 261 321 IPR002048 GO:0005509
Car18g01232 346 Pfam EF hand 220 236 IPR002048 GO:0005509
Car18g01232 346 Pfam EF hand 142 154 IPR002048 GO:0005509
Car18g01232 346 ProSitePatterns EF-hand calcium-binding domain. 185 197 IPR018247 -
Car18g01232 346 ProSiteProfiles EF-hand calcium-binding domain profile. 172 207 IPR002048 GO:0005509
Car18g01232 346 ProSitePatterns EF-hand calcium-binding domain. 224 236 IPR018247 -
Car18g01232 346 ProSitePatterns EF-hand calcium-binding domain. 307 319 IPR018247 -
Car18g01232 346 ProSitePatterns EF-hand calcium-binding domain. 143 155 IPR018247 -
Car18g01232 346 ProSiteProfiles EF-hand calcium-binding domain profile. 255 290 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01232 K23901 CALU; calumenin - csv:101207354 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02162 Car-Chr4:17560115 Car18g01232 Car-Chr18:11827859 3.41E-22 dispersed
Car04g02163 Car-Chr4:17561405 Car18g01232 Car-Chr18:11827859 1.08E-26 dispersed
Car18g01232 Car-Chr18:11827859 Car02g01529 Car-Chr2:9830847 7.48E-06 dispersed
Car18g01232 Car-Chr18:11827859 Car15g00746 Car-Chr15:4185366 8.72E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01232 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0