Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01234 ATGGCTTTGTTGAGTCCTCGATTGCATAGATTCCGCTTATTAACCAAGCTCCACCAAGCCTCTGCCTCCAAACCCACTAACGCAAATCAGCTCACTGTCAGAAGAAAAACCGGATGCTGCTATGCCATAGCTGTTGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATCAGATGGGGTTCGACCACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGATGCTGTTGTGCGGTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTGTTCCTCCGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCATAACAGCTGTACAAGGTGGTCTGCTGTTGAATGGAGGGGATTTTGAAGTGATCAAAGCGGCTTTGGAGAAGGCTTTTGATGATACTGATAAAAGATTACTCCCTTTGCTGGAGGCAGCTGGGAAGGAAGATGAATCTGGTTCCACTGCAACTGTTGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTGTTGTCACGTTCCGGAGGAGCACAGGTATTGACGAGTTCTCATCGGCCTTATGGAAACAACACCACCTCACTGCAAGAAATCAGAAGAATTAGAGAAGCAGGTGGATGGATCGTTAACGGGAGAATCTGTGGAGACATCTCTGTATCCCGTGCATTTGGTGACATACGATTCAAGACGAAGAAATACGAGTTTGGTCCTTTTAACTGTCCTCTAATATTCTCGAGCTTCAGAAGGTTTCTTTTTGCATCTCCTTATGGTTATATTCTATATAACAGGATGCTGAGAAAAGGAGTTGAAGAAGGGAGATGGTCTGAAAAGTTTGTTTCTCGTGTACAGTTCAATGGAGATTTGGTAACCGCATCACCAGAAGTTCTTCAGCTTACCCTCGGATCAAATGTCGAGTTTGTACTGATAGCGTCGGATGGCCTATGGGATTACATGAATAGCTCCGAAGCGGTTAAGTTTGTTCGGAATCAATTGAGTCAGCATGGTGATGTTCAGTTAGCTTGTGAAGCCCTCGCACAAGCAGCCTTGGTAATACTCGCACAATTTGATTTGTTTAAAGCTTCTAATAACAAGAACTTGGTTTCCAGTTCTAATAAAGCAAATATTATGTTTGACAAAGGGTCACAAGACAATATCAGCATCATCATGGCTGATTTGGGGCGGACAGATTGGCAGAATTTGCCCCTCCAGCAAGACAACGTCATATTTGAAGTGGCTCAAGCTTTTGGTACGATTGGGGTCGTTTCTTTCGGTATTTGGTGGGCGTCCTCTACTTTCTGTCTTTAA 1338 44.62 MALLSPRLHRFRLLTKLHQASASKPTNANQLTVRRKTGCCYAIAVDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGLNGFLFAAVFDGHGGCSSVKFLREELYKDCITAVQGGLLLNGGDFEVIKAALEKAFDDTDKRLLPLLEAAGKEDESGSTATVAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNTTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKYEFGPFNCPLIFSSFRRFLFASPYGYILYNRMLRKGVEEGRWSEKFVSRVQFNGDLVTASPEVLQLTLGSNVEFVLIASDGLWDYMNSSEAVKFVRNQLSQHGDVQLACEALAQAALVILAQFDLFKASNNKNLVSSSNKANIMFDKGSQDNISIIMADLGRTDWQNLPLQQDNVIFEVAQAFGTIGVVSFGIWWASSTFCL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11831260 11834152 - Carg20336-RA Car18g01234 166936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01234 445 Pfam Protein phosphatase 2C 60 361 IPR001932 -
Car18g01234 445 ProSiteProfiles PPM-type phosphatase domain profile. 58 403 IPR001932 -
Car18g01234 445 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car16g00037 Car18g01234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01234 Car-Chr18:11831260 Car09g00337 Car-Chr9:1867742 6.98E-25 dispersed
Car16g00037 Car-Chr16:273292 Car18g01234 Car-Chr18:11831260 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01234 K04457 - csv:101218076 639.802