Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01238 ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA 300 42.67 MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11843937 11845073 + Carg20332-RA Car18g01238 166940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01238 99 PANTHER GEO08993P1 11 94 - -
Car18g01238 99 Pfam Transcription factor Pcc1 18 91 IPR015419 -
Car18g01238 99 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 11 94 IPR015419 -
Car18g01238 99 Gene3D - 7 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01238 K15902 LAGE3, PCC1; EKC/KEOPS complex subunit LAGE3/PCC1 - csv:101217139 164.466
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00039 Car18g01238 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00039 Car-Chr16:284703 Car18g01238 Car-Chr18:11843937 6.93E-59 wgd
Car16g00039 Car-Chr16:284703 Car18g01238 Car-Chr18:11843937 6.93E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1030 . . . . Bpe03g00194 . . Bma14g02011 Cmo16g00047 . . . . . Sed13g0050 . Cpe14g00032 Bhi01g01503 Tan01g0083 Cmetu06g0196 . Hepe07g0052 Mch10g0050 . . . . . . . . . Cone5ag0697 . . . . . Cme06g01153 . . . . . . . . . . . . . Car16g00039 Car18g01238 . . . . . . . . . Cla05g00977 Cam05g1070 Cec05g1076 Cco05g1068 Clacu05g1062 Cmu05g1013 Cre05g1089 . Csa03g01976 Chy06g01189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009672 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01238 Car_Chr18 FPKM 12.376392 11.844942 20.236643 20.995584 17.748245 12.722889 19.671648 16.566803 16.813091 20.034687