Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01240 ATGGAGCCCAGCACCAAACTACACCCACACGACTTTGACTTTGAGTGGCCATATCACCAACATCTTTTCCCCTTCGACCACGAAGCACTAGAGCTTCCTCCATTAGATGTGGATGCATCCTTCGACTTCAACTCGCTTTCCTTACCATTCCCTTGGGACGATATTTCCGAGTTGGAGGCTGAAATTTTGTGGTTGGACAAACACATGATACCAGTTACACCACTTAATGATGAGGACATGGTGGCTGTTGATGAGACGAAGGCGGAGAGAATGGTGAAATTAAAAGACAACGACGGAACGAGTAGGGAGTTGCAAGAGGAGACAAGGGTGATTGAAACAGGGCTTTCAAGTTGTAAAGAAAAAGGAGAAGAAGAAGAGTGTGAAAGGAGGATGAGATTAATAATGAGAAACAGGAGGAGAAAGATTTCAGCGTTGGGATTGGACGAGATTCAAAAGCACTTTCATATCCCAATAACAGAGGCCGCAAAAGCGATGAATGTGGGTTTGACAGTGCTTAAAAGGAGGTGCAGAGAACTTCATATAATGAGATGGCCTCATAGAAAGCTCAAGAGCTTGAACTCTCTCATTACAAATGTCCAGGACGCTCAACGTCGGTGCAATTTGGAAGTGCAGGAGATGGGGTTGACAAATGAGATAAAAGGGTTGGAGGAGCACAAGAGGCTTGTGGAGGAACTCCCAGATATGGACCTCACTCACAGAACCAGAAGGCTCAGGCAAGCCTGTTTCAAAGCCAATTACAAGAAGAAGCGAAGGTCCAATGTTGATGCTCTTCGCTGA 798 45.61 MEPSTKLHPHDFDFEWPYHQHLFPFDHEALELPPLDVDASFDFNSLSLPFPWDDISELEAEILWLDKHMIPVTPLNDEDMVAVDETKAERMVKLKDNDGTSRELQEETRVIETGLSSCKEKGEEEECERRMRLIMRNRRRKISALGLDEIQKHFHIPITEAAKAMNVGLTVLKRRCRELHIMRWPHRKLKSLNSLITNVQDAQRRCNLEVQEMGLTNEIKGLEEHKRLVEELPDMDLTHRTRRLRQACFKANYKKKRRSNVDALR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11849431 11850426 + Carg20330-RA Car18g01240 166942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01240 265 Pfam RWP-RK domain 145 192 IPR003035 -
Car18g01240 265 ProSiteProfiles RWP-RK domain profile. 129 212 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01240 - - - cpep:111801996 353.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00151 Car-Chr11:850641 Car18g01240 Car-Chr18:11849431 1.37E-32 dispersed
Car18g01240 Car-Chr18:11849431 Car06g01442 Car-Chr6:10250361 1.68E-08 dispersed
Car18g01240 Car-Chr18:11849431 Car10g00181 Car-Chr10:882053 9.41E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1032 . . . . . . . . . . . . . . Sed05g1782 . . Bhi01g01498 Tan01g0086 Cmetu03g1368 . Hepe07g0054 Mch10g0052 . . . . . . . . . . Cone14ag0006 . . . . Cme06g01149 . . . . . Bpe12g00349 Bma08g00389 . . . . . . . Car18g01240 . . . . . . . . . Cla05g00975 Cam05g1067 Cec05g1073 Cco05g1065 Clacu05g1059 Cmu05g1010 Cre05g1087 . Csa03g01978 Chy06g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5231 PF02042 RWP-RK 9.60E-23 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01240 Car_Chr18 FPKM 12.944787 14.35974 15.039309 15.883526 19.872828 15.957198 21.904335 14.510212 14.974102 16.798506