Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01241 ATGAGGACTGCAACAGGGGAAAATCCAAGCTCCACGCCACCAAAGCTGTCTTTGTTTTCTTTTCCAAGACAACCATTGGAGCCGCCAGGGATGGTGACGCCGCCGCTGCACGCGTCGATTTCTGTGCCGTTTCACTGGGAAGAGGCACCGGGGAAGCCGAAGCCGCTCGGAATTATTGAATTGAATCCAAAGCCCAAAAGTGCAAGAACTTTGGATCTGCCACCCCGGCTGTTCGCCGACACCAAGGTAGCCCATTTTGCCTCTCCGACAATCGCCGCGGATGACCCCGTCGCCGGCCGAGACCTATCGTTCAGGTTCCCGGACAGCTGCGCGGAGACGGCGACGGCGACGGAGACGAGGGAGGGAAAGGATGTTAACAAGGAGAATGTGAAGCGTGGGTCTGAAATTTCACTCTCGGCCGGCGGTGTGGACGACGGCAATACGAGAGTGAAGATCACGAGATTAAGGATTAGAAGAAACTTTATCGGGACATGGAATTCAAAGTCGCACATCATCGCATGTATTTATGGGAGCTTGAAGCAAGTGCTTCCATGGAGACGCAAGCATGATGAATGA 576 54.17 MRTATGENPSSTPPKLSLFSFPRQPLEPPGMVTPPLHASISVPFHWEEAPGKPKPLGIIELNPKPKSARTLDLPPRLFADTKVAHFASPTIAADDPVAGRDLSFRFPDSCAETATATETREGKDVNKENVKRGSEISLSAGGVDDGNTRVKITRLRIRRNFIGTWNSKSHIIACIYGSLKQVLPWRRKHDE 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11850037 11851422 - Carg20329-RA Car18g01241 166943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01241 191 Pfam Protein of unknown function (DUF688) 40 115 IPR007789 -
Car18g01241 191 MobiDBLite consensus disorder prediction 1 18 - -
Car18g01241 191 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01241 - - - cmax:111467482 340.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00040 Car18g01241 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00040 Car-Chr16:286387 Car18g01241 Car-Chr18:11850037 1.04E-77 dispersed
Car14g01917 Car-Chr14:14717327 Car18g01241 Car-Chr18:11850037 2.81E-08 wgd
Car18g01241 Car-Chr18:11850037 Car02g00930 Car-Chr2:6579126 7.26E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1033 . . . . Bpe03g00192 . . . Cmo16g00049 . . . . . Sed01g3487 . Cpe14g00034 Bhi01g01497 Tan01g0087 Cmetu06g0291 . Hepe07g0055 Mch10g0053 . . . . . . . . Cone1ag0990 Cone5ag0694 . . . . . Cme06g01148 . . Bda06g00787 . . . . . . . . . . Car16g00040 Car18g01241 . . . . . . . . . Cla05g00974 Cam05g1066 Cec05g1072 Cco05g1064 Clacu05g1058 Cmu05g1009 Cre05g1086 . Csa03g01979 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014296 1 1 0 0 0 1 1 0 1 0 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 2 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01241 Car_Chr18 FPKM 2.10814 2.579835 1.022805 0.761479 4.280081 5.320907 4.299435 0.850854 0.841874 0.811431