Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01245 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCCTCCAAGGAAGTTGCCAGTTTAACTCTTTCTCGTTGTAGACACTGTGTTTCCAATTATATTCACTCTGCTAGCAATCCCATTTCCCACTGCGCGAGTCGTAACAAATCGAATGACCTCTATCTCAGCTCACCTTTCCACTTGGTCTCTTTCAAGTCGGTTTCACTTAGAGGCGACTTTCTCCACCACGGGACTCAACCTTTCGATCATCGGGGGGCTTATCCGAATTCCAACAAGACCCTGAATGAGAGGTTGAGCAGGGGCGGTTGTTTTATGAGCACTTATGGGGACCCGCCTGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAACGGTCATGGAGGCGGCGGTGGTGGAAGCGCCAACTCTGGTTCTGGTGGTGGTGGGTTTGGCGCGAACTCGAATGATGGGTGTTGGGGTGGTTCCAGTTTGGGTCCTAATTTTCCAACCCCGAAGGAAATCTCCAAGGGGCTTGATAAGTTTGTAATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCGTTGCAAAGGTTGTTGAATTTGAACGCTATATACTTCCTGACCTTTAAATGTTTTGTTTTTCGTGTGCAATCTAGGCCTACAGGAGATACGGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTTCTCGCTAAAACCTTGGCACGCTTTGTTAATGTTCCATTTGTTATTGCAGATGCAACTACCCTAACACAGGCGGGATATGTTGGAGAAGACGTGGAGTCTATATTGTACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATAGACGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTAAACGTGCCTGAGAAAGGTGCAAGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATCGACTTAGAAAAAACTATCTCAGAAAGGCGACAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAAGTGGTGTTACAGATGCCATTGTTACTTCTTCACTATTGGAGACTGTTGAAAGTAGTGACCTCATTGCATATGGGTTAATACCCGAATTTGTTGGTCGATTCCCCATCCTCGTCAGTTTGTCAGCCCTAACAGAAGACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCGCTAGGAAAGCAGTATAGAAAGATGTTCCAGATGAATGACGTCAAGCTCCACTTCACAGAAAATGCCTTGAGATTAATTGCAAGAAAGGCAATGTCTAAGAACACTGGAGCACGGGGTTTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTACGAGATTCCTGATGTCAGAACAGGTGAGGATATAATCGATGCTGTTATCATTGATGAAGAATCCATTGGGTCAGACAGCACGGGTTGTGGCGCTAAAATTCTTTACGGAAAGGGAGCATTGGATAGCTATCTTTCAGGACAAAAGACTACAAGTCAGGGTTCCGAAAAAGAGGCAGAACCCGAAAGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCAGCATGTAA 1806 45.29 MAAAALRSRSSKEVASLTLSRCRHCVSNYIHSASNPISHCASRNKSNDLYLSSPFHLVSFKSVSLRGDFLHHGTQPFDHRGAYPNSNKTLNERLSRGGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGHGGGGGGSANSGSGGGGFGANSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRLLNLNAIYFLTFKCFVFRVQSRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRASGVTDAIVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTEDQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDVRTGEDIIDAVIIDEESIGSDSTGCGAKILYGKGALDSYLSGQKTTSQGSEKEAEPESETDLPSVVASSM 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11859917 11868929 + Carg20325-RA Car18g01245 166947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01245 601 MobiDBLite consensus disorder prediction 572 601 - -
Car18g01245 601 MobiDBLite consensus disorder prediction 122 142 - -
Car18g01245 601 CDD AAA 249 360 - -
Car18g01245 601 Pfam C-terminal, D2-small domain, of ClpB protein 459 529 IPR019489 -
Car18g01245 601 SMART AAA_5 248 444 IPR003593 -
Car18g01245 601 Pfam AAA domain (Cdc48 subfamily) 248 452 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01245 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101215939 953.355
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01068 Car-Chr9:9611194 Car18g01245 Car-Chr18:11859917 6.03E-110 dispersed
Car18g01245 Car-Chr18:11859917 Car06g00958 Car-Chr6:7371712 3.52E-06 dispersed
Car04g01921 Car-Chr4:11412819 Car18g01245 Car-Chr18:11859917 0 transposed
Car16g00043 Car-Chr16:307171 Car18g01245 Car-Chr18:11859917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g01245 Car_Chr18 FPKM 0.0 1.202816 51.672703 52.466114 0.537603 0.0 0.0 186.736343 207.755203 198.640091