Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g01246 ATGGATTTAGATAGTATCGAGTGTGTATCATCTTCCGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATTCTTATTCCCATTCTCATCATCATCCCGAGTTGTCGGCAACCAAGCCTCGAAATGGAAACAATAATAGCGCTGTAGCAGGCCCCACTGCCACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGACATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAGATATTATTCCTTGGGATGCCCAGAAATATTTCCTTACTACAGTAAACTCAAGCACGAAGCATTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTTCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACGGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTGTATATGGCTTTCCTTCGTTTCATGGGCGACGAGAATGAGGCGCGAACCTACAGCTACAGTCTGGAGGTGGGTGGATATGGGCGAAAACTGATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGCCATCGAAAAGTGAGGGATAGCCATGATGGGCTGATGATTCAAAGAAATATGGCTCTGTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGGGTCTGCATACCCAACCTTATCGAGTGTGTCTCGTCGTCCGATGGTCTCGATGAGGATGACATCCATTTGCACCACACTCTTCATCCTTATTCTCACTCTCATCATCACCCCGAGTTGTCAGCATCGAAGCCTCGTAATGGTAACAACAACAGCGCTGTGAACGCCCCCACTGCCATTGCCATTGCGCCGTCGACTAGCGTCCATGAATTGCTCGAATGCCCTGTCTGCACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACTTGTAAAACACGGGTTCATAATCGCTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTTTTCCCTCGGATGCCCTGAGATATTTCCGTACTATGGTAAGCTTAAGCATGAGGCTTTATGCAACTTCAGACCCTATAGTTGCCCGTATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCCTTTCTTGTCGCCCATCTGAGGGACGACCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGTTATGTGAAATCCAATCCAAAGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTCGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTACATGGCTTTCCTTCGATTCATGGGAGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAAGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTCGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATTCAAAGAAATATGGCTCTCTTCTTCTCAGGCGGGGATAGAAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGCCTGCATTCCGAACCTTTGTAGCTAA 1974 47.57 MDLDSIECVSSSDGLDEDEIHLHHTLHSYSHSHHHPELSATKPRNGNNNSAVAGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCRYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLMIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLIECVSSSDGLDEDDIHLHHTLHPYSHSHHHPELSASKPRNGNNNSAVNAPTAIAIAPSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYGKLKHEALCNFRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPKEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGACIPNLCS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11869814 11875544 + Carg20324-RA Car18g01246 166948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g01246 657 ProSiteProfiles Zinc finger SIAH-type profile. 449 509 IPR013010 GO:0008270
Car18g01246 657 ProSiteProfiles Zinc finger RING-type profile. 396 432 IPR001841 -
Car18g01246 657 MobiDBLite consensus disorder prediction 27 58 - -
Car18g01246 657 MobiDBLite consensus disorder prediction 41 57 - -
Car18g01246 657 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Car18g01246 657 MobiDBLite consensus disorder prediction 351 375 - -
Car18g01246 657 Pfam Seven in absentia protein family 438 637 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car18g01246 657 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car18g01246 657 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car16g00044 Car18g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00096 Car-Chr8:556330 Car18g01246 Car-Chr18:11869814 5.07E-165 dispersed
Car17g00506 Car-Chr17:4494282 Car18g01246 Car-Chr18:11869814 4.89E-174 dispersed
Car18g00793 Car-Chr18:9035299 Car18g01246 Car-Chr18:11869814 3.58E-165 dispersed
Car16g00044 Car-Chr16:313640 Car18g01246 Car-Chr18:11869814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g01246 K04506 - csv:101215696 662.914