Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00018 ATGAATCCTCAATATCCAGTGAAGGAGGAGGACTGGGGCTCAAGTTCGCCGGAGGTACGCGGCGGTTATGGCTTCCCAGCCACGCCCCAGCCGATGGAAGGTCTTTACGACGGTGGTCCTCCGCCGTTTCTGATCAAGATATTCGACATGGTGGAGGATCCGATTACCGAACACATTATCTCTTGGGGCAGGGGAGGAATCAGCTTCATCGTTTGGGATCCCCAAGCCTTCTCCGCTAATTTACTGCCTCGATTCTTCAAGCACAATAACTTCTCAAGCTTCATCCGGCAGCTCAACACTTACGGTTTTAGGAAGATTAATCCAGAGAGATGGGAGTTTGCCAATGAAGGATTCTTGAGAGGCCAAAAGCATCTTCTTAGGACAATTAGGAGAAGAAAACCACTAGCATCACCCTCTGAGTCTCTGCCTCTAGAACAAGAACCAGGTCCTTGCGTTGAAATCGGTCGATTCGGGCTTGACGCCGAACTCGACCGGTTGAAACGGGACAAGCAAATGGTGATGATGGAGCTAGTTAAGCTGAGACGTGAGCAGCAGAATACAAGAGCCTACCTACAAGTAATGGAGCAAAAGCTGCAAGGGACAGAGATGAAACAGCGACAGATGATGAAATTCTTAGCAAGAGCAATGCAGAATCCAGACTTCATTCAGCAGCTAGTGCACCAGAAGAAGAAAAGGGAGGTTGAAGAAGCAGCAACAAAGAAGAGGAGATGGCCCATTGATCAAGGACCAAGCAGCTCCAGAGGCAGTGAAGAAGGAACCTCAAACCCCATTAAGATTGAGCCTCTGGAGTTTTGTGGATATGAAGTATCTGAACTGGAAGCACTTGCTATGGAAATGCAAGGACTAGGGAAGGGAGTTAAGAAAGAAGCAGAAGTAAAGGAAGAGCTGCAGGGTCCAGAGAGTGAAGATACAGAGCTGGATGAGGGGTTCTGGGAGGAGTTTTTCAGTGAAAGAATAGAAGAAGACGACGTGAAAGCGTTGAGCCATCGCTTCGACTGTTTCGGTTCGACCCGAAAGTAA 1041 48.51 MNPQYPVKEEDWGSSSPEVRGGYGFPATPQPMEGLYDGGPPPFLIKIFDMVEDPITEHIISWGRGGISFIVWDPQAFSANLLPRFFKHNNFSSFIRQLNTYGFRKINPERWEFANEGFLRGQKHLLRTIRRRKPLASPSESLPLEQEPGPCVEIGRFGLDAELDRLKRDKQMVMMELVKLRREQQNTRAYLQVMEQKLQGTEMKQRQMMKFLARAMQNPDFIQQLVHQKKKREVEEAATKKRRWPIDQGPSSSRGSEEGTSNPIKIEPLEFCGYEVSELEALAMEMQGLGKGVKKEAEVKEELQGPESEDTELDEGFWEEFFSERIEEDDVKALSHRFDCFGSTRK 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 130212 132921 - Carg16826-RA Car19g00018 166985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00018 346 MobiDBLite consensus disorder prediction 232 264 - -
Car19g00018 346 Coils Coil 163 183 - -
Car19g00018 346 MobiDBLite consensus disorder prediction 1 20 - -
Car19g00018 346 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car19g00018 346 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00018 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101212281 551.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01187 Car-Chr6:8705908 Car19g00018 Car-Chr19:130212 1.94E-112 dispersed
Car14g01574 Car-Chr14:12835035 Car19g00018 Car-Chr19:130212 5.57E-106 wgd
Car17g01136 Car-Chr17:8717086 Car19g00018 Car-Chr19:130212 7.13E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5234 PF00447 HSF_DNA-bind 1.20E-30 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00018 Car_Chr19 FPKM 34.179501 37.148811 8.204548 6.499637 6.058547 7.876708 6.564007 10.189621 11.298044 10.821582