Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00051 ATGGAAGAGCTTGAAGAAGCTAACAGAGCCGCCATAGATAGCTGCCATGGAGTTTTGAATCTTTTAGCTCAGCCTTCTCCTCAAGAACAAGGTGAGCTGAGGAAGAATTTAATGGTGGAAACTGGAGAGGCTGTTTTTAAGCTCAAGAAAGTGGTATCTCTTTTGAATTCTGGGTTTGGTTATGCAAAAGTTAGAAGATTCAAGAACATTCCTCTGCCTTTACCCCAAAAACTTCTCTTAGATCCTCCAAACAATGGTTTGAATGGTAAAGTTTCAGTTTTTTTGGGAAACCCAGATTTGGAAATGGATCAAAATCATAAGAATTCCCTCAAAATTCATAAACAAGCTGCTCCATCTTTGAACTTTAGCTTCCCCCAGCAACAGCAGCAGCAGAGGAAGCAAGCAGAGATGATGTTTCTTAGGAGTAACAGTGGGATGAATATGAATTTTGATGCTTCTAAGTGCACATTGACAATGTCATCTGCTAGATCTTTCATTTCTTCGTTGAGTATGGACGGGAGTGTTGCGGACGGGAGCTCGTTCCATTTGATCGGGCCGTCGTCGACGATGTCGGGCGATAACAAGAGGAGGTTTTCTGGAAGGGGAGATGAAGGGAGCTTGAAATGTGGTAGCACTGGCAAGTGCCATTGCTCAAAGAAGAGGAAACATCGAGTGAAGAGATCAATTAAGGTTCCTGCTATAAGTAACAAACTTGCTGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGTTCTCCTCATCCCAGGGGTTACTACAAATGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCACGTCGAGCGATGCTTAGAAGACCCGTCGATGCTTATCGTAACGTACGAAGGAGAGCATAATCACCCGAAAATGTCGACGCAATCTGCACACACTTAG 933 43.73 MEELEEANRAAIDSCHGVLNLLAQPSPQEQGELRKNLMVETGEAVFKLKKVVSLLNSGFGYAKVRRFKNIPLPLPQKLLLDPPNNGLNGKVSVFLGNPDLEMDQNHKNSLKIHKQAAPSLNFSFPQQQQQQRKQAEMMFLRSNSGMNMNFDASKCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSSTMSGDNKRRFSGRGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHT 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 341369 343394 + Carg16860-RA Car19g00051 167018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00051 310 Gene3D WRKY domain 226 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car19g00051 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 310 IPR044810 GO:0003700
Car19g00051 310 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car19g00051 310 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00051 310 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 3 310 - -
Car19g00051 310 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car19g00051 310 Pfam Plant zinc cluster domain 206 240 IPR018872 -
Car19g00051 310 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00285 Car19g00051 CCT
Car02g01517 Car19g00051 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00285 Car-Chr8:1797830 Car19g00051 Car-Chr19:341369 4.25E-124 dispersed
Car17g01151 Car-Chr17:8826624 Car19g00051 Car-Chr19:341369 1.95E-118 dispersed
Car19g00051 Car-Chr19:341369 Car20g00828 Car-Chr20:5497044 6.96E-52 dispersed
Car19g00051 Car-Chr19:341369 Car02g01517 Car-Chr2:9786948 7.44E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5236 PF03106 WRKY 9.90E-27 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00051 - - cmax:111466947 610.527