Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00060 ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 678 47.94 MASSSSSSSTANSSVSGGGGGGGGGGGGGSPCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHGDLGELQALALRMMRN 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 522150 523897 + Carg16869-RA Car19g00060 167027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00060 225 MobiDBLite consensus disorder prediction 1 22 - -
Car19g00060 225 Coils Coil 111 138 - -
Car19g00060 225 MobiDBLite consensus disorder prediction 1 17 - -
Car19g00060 225 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Car19g00060 225 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01505 Car-Chr2:9742642 Car19g00060 Car-Chr19:522150 4.10E-86 dispersed
Car17g00028 Car-Chr17:122751 Car19g00060 Car-Chr19:522150 1.02E-54 dispersed
Car19g00060 Car-Chr19:522150 Car04g00183 Car-Chr4:1010728 2.92E-43 dispersed
Car19g00060 Car-Chr19:522150 Car19g00061 Car-Chr19:528051 1.53E-56 tandem
Car19g00060 Car-Chr19:522150 Car02g01504 Car-Chr2:9741088 7.13E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5239 PF03195 LOB 3.50E-37 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00060 K13944 - csv:101214521 282.722