Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00061 ATGACAGGTTCTGGTTCTCCCTGTGGAGCCTGTAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGCGTTTTTGCGCCATATTTCTGCCATGAACAAGGCGCTACTCATTTTGCTGCTATTCATAAGGTGTTTGGTGCTAGCAATGTGTCTAAGCTTCTTGCTCGTTTGCCTGTTAGTGAGCGCTGTGAGGCTGCTGTTACTATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTAGCTTCTCTTAAGGAACAAGCAGCAGAAAACATGATGAACGTATCTGGTAATAGAGGTGAGGCTGAGAAGAATAGCAGAAAGGTTCCTTGTCATCCACAAGACCTCCATAGCTGGTTTCAGTCGGAGCAACCGAACGTAATGCTCGAGTTCAATCCGAATCCGACTCGGAACAATTCGGCATCGAACCCTTATTATGATGAGAATTATAGCATTATGGTTAATTCTCAGTCCAATGAGAACTATGAGCATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCCATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGTAATAGGCATTGGTAA 717 42.82 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAENMMNVSGNRGEAEKNSRKVPCHPQDLHSWFQSEQPNVMLEFNPNPTRNNSASNPYYDENYSIMVNSQSNENYEHHMAKMEESGSYGSFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNRHW 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 528051 529452 - Carg16870-RA Car19g00061 167028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00061 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Car19g00061 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 235 - -
Car19g00061 238 Coils Coil 87 114 - -
Car19g00061 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 235 - -
Car19g00061 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01504 Car-Chr2:9741088 Car19g00061 Car-Chr19:528051 5.26E-153 dispersed
Car08g00248 Car-Chr8:1580902 Car19g00061 Car-Chr19:528051 2.95E-57 dispersed
Car17g00029 Car-Chr17:129349 Car19g00061 Car-Chr19:528051 2.12E-50 dispersed
Car19g00060 Car-Chr19:522150 Car19g00061 Car-Chr19:528051 1.53E-56 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5240 PF03195 LOB 5.40E-36 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00061 K13945 - csv:101214764 423.705