Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car19g00061 | ATGACAGGTTCTGGTTCTCCCTGTGGAGCCTGTAAGTTCTTGAGAAGAAAATGTGTCAGAGGCTGCGTTTTTGCGCCATATTTCTGCCATGAACAAGGCGCTACTCATTTTGCTGCTATTCATAAGGTGTTTGGTGCTAGCAATGTGTCTAAGCTTCTTGCTCGTTTGCCTGTTAGTGAGCGCTGTGAGGCTGCTGTTACTATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTTGTGAGTCTTCAAGCACAACTAGCTTCTCTTAAGGAACAAGCAGCAGAAAACATGATGAACGTATCTGGTAATAGAGGTGAGGCTGAGAAGAATAGCAGAAAGGTTCCTTGTCATCCACAAGACCTCCATAGCTGGTTTCAGTCGGAGCAACCGAACGTAATGCTCGAGTTCAATCCGAATCCGACTCGGAACAATTCGGCATCGAACCCTTATTATGATGAGAATTATAGCATTATGGTTAATTCTCAGTCCAATGAGAACTATGAGCATCACATGGCTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCCATGTATACTCTTGATCACTTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGTAATAGGCATTGGTAA | 717 | 42.82 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPVSERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAENMMNVSGNRGEAEKNSRKVPCHPQDLHSWFQSEQPNVMLEFNPNPTRNNSASNPYYDENYSIMVNSQSNENYEHHMAKMEESGSYGSFEETSGYSMYTLDHLHSNVQQWSFNESADDLQSVAFGNRHW | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 528051 | 529452 | - | Carg16870-RA | Car19g00061 | 167028 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car19g00061 | 238 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Car19g00061 | 238 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 235 | - | - | |
Car19g00061 | 238 | Coils | Coil | 87 | 114 | - | - | |
Car19g00061 | 238 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 235 | - | - | |
Car19g00061 | 238 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g01504 | Car-Chr2:9741088 | Car19g00061 | Car-Chr19:528051 | 5.26E-153 | dispersed | |
Car08g00248 | Car-Chr8:1580902 | Car19g00061 | Car-Chr19:528051 | 2.95E-57 | dispersed | |
Car17g00029 | Car-Chr17:129349 | Car19g00061 | Car-Chr19:528051 | 2.12E-50 | dispersed | |
Car19g00060 | Car-Chr19:522150 | Car19g00061 | Car-Chr19:528051 | 1.53E-56 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5240 | PF03195 | LOB | 5.40E-36 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car19g00061 | K13945 | - | csv:101214764 | 423.705 |