Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00112 ATGGCGGTCACTCTTAGACTACAGTTTTCAACCGCTTCATTAATGCTCTTCCTTCTTCTCAACATCCTCTTCGTTCAATCCAGTTTTGCTGGAGATCAGCGATTGCAGAGCTTTAATTCTTCATCCATGGCGGACCGTTTTTCTGGAGATGAGCGACTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGCTTTGCTGGAGATCAGCGATTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGGTATGTTAAGAATGAGCATGCCGTTGATAATCCAGAGGAAATTGCATCAATGGTGGATTTGAGCATACGCAACAGCACAGAGAGAAGGAACTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATTGATGATTGTTGGCGTTGTGACCCACGTTGGCAACTGCGGCGAAAGCGCCTCGCCAATTGCGGCATTGGGTTTGGTCGTAATGCAGTCGGTGGCCGTGATGGGCGATACTACGTCGTTTCTGATCCACGTGACGACGATCCTGTCAATCCCAGACCAGGCACCCTCCGCCATGCTGTGATTCAAGACAGACCATTATGGATTGTGTTCAAACGAGACATGGTGATCACTTTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGCGTCAATGTCCACATCGCTTATGGTGCTTGTATTACAATCCAATTCATTACCAATGTTATTATTCATGGTTTGCATATTCATGACTGCAAGCCAACGGGGAATGCCATGGTTCGAAGCTCGCCTAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCAATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCTTGTTCTGATGGGCTCATTGATGCTATCATGGGATCAACTGCTATCACAATTTCTAACAATTACTTCACCCACCACAATGAGGTGATGCTCTTGGGACATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCACTGGGTAATGTATGCCATTGGTGGAAGTGCTAATCCCACCATTAATAGCCAGGGCAACCGATATCTTGCCCCCGTCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTTGTCACATCTAACGGTGTATGGAGGCATTGGAATTGGAGATCGGAGGGAGATCTCATGCTAAATGGAGCCTATTTCACTCCATCAGGGGCTGGTGCAGGAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCTCGCTTACTTCAAATGCA 1377 46.19 MAVTLRLQFSTASLMLFLLLNILFVQSSFAGDQRLQSFNSSSMADRFSGDERLQSFNSSSMADRFAGDQRLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKRLANCGIGFGRNAVGGRDGRYYVVSDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVVTSNGVWRHWNWRSEGDLMLNGAYFTPSGAGAGASYARASSLGAKSSSLVGSLTSNA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 937841 943747 - Carg05405-RA Car19g00112 167079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00112 459 Pfam Pectate lyase 205 385 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00910 Car-Chr8:6115148 Car19g00112 Car-Chr19:937841 0 dispersed
Car18g00198 Car-Chr18:1127035 Car19g00112 Car-Chr19:937841 0 dispersed
Car14g01674 Car-Chr14:13329725 Car19g00112 Car-Chr19:937841 0 wgd
Car17g00103 Car-Chr17:607458 Car19g00112 Car-Chr19:937841 0 wgd
Car19g00112 Car-Chr19:937841 Car02g01451 Car-Chr2:9460031 0 wgd
Car19g00112 Car-Chr19:937841 Car06g01087 Car-Chr6:8171712 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00112 K01728 - csv:101207204 768.844