Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00141 ATGGGGCCGGGCGTGTTCTTGTCTGGCGCTGCAAGACAGGCCGAGATTCTCAGAAAAGATGGAAATCACTATTTCCAGAAGGGCCGGATTGGAGCCGCCATTGAAGCCTATACCGAGGCGATTACGCTATGTCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGACAACAATTCTGTCAAGGCACATTACATGGTAGGATTAGCATTAATTCAAAACAAAGACTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGAGGTGCAAATCAAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAATGCAAAATACAGGGAGTGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAGGCTTGTGAGGCTGCCCTTGAACAAAAATACTTCCTTGACCAGTCTGAACCAGAAGGGTTCGTAGATCAAGCCGAAAGCGCTCATCGGGAACAATTAAACTCTCTAAGAAGTGTGTTTGAAAACTATGCCGTGGCTGATGCACCATCTGAGGTCCCCGATCATCTTTGTTGTAAAATTACGCTCGATATTCTTCGTGATCCCGTTATTACTCCAAGCGGGGTTACATATGAGAGAGCAGTGATCCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACGCGGGAGCTACTCGACGAGTCTCAGCTAGTACCGAACTTGGCCATAAAGGAAGCTGTACAGGCATTTCTAGATAAGCATGGATGGGCTTACAATACAAATTAA 846 46.1 MGPGVFLSGAARQAEILRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDNNSVKAHYMVGLALIQNKDYPEGIKHLEKALDLGRGANQKSYMVEEIWQELANAKYREWEQASTKRSWELQTLKEACEAALEQKYFLDQSEPEGFVDQAESAHREQLNSLRSVFENYAVADAPSEVPDHLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQAFLDKHGWAYNTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1215612 1221122 + Carg27958-RA Car19g00141 167108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00141 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Car19g00141 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Car19g00141 281 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Car19g00141 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Car19g00141 281 PANTHER OS08G0113300 PROTEIN 9 280 - -
Car19g00141 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Car19g00141 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Car19g00141 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Car19g00141 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Car19g00141 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Car19g00141 281 SUPERFAMILY RING/U-box 195 278 - -
Car19g00141 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Car19g00141 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Car19g00141 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Car19g00141 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Car19g00141 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Car19g00141 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00141 Car-Chr19:1215612 Car09g00706 Car-Chr9:4197145 5.93E-13 dispersed
Car19g00141 Car-Chr19:1215612 Car02g01420 Car-Chr2:9324369 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00141 K09561 - csv:101215457 514.612