Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00142 ATGGCGAAAACGGGGGTGTTTGATTCTGATCCTACAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATTGATGCTATAATTGATGATGATAATTGCTCTACCGACACCATCGATCATGCTAAAGAGATTATTTCTGCGCTTAAGGAGTTGAAACTTAGGAAGAGATCACGCTCTTCTAATCGTTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTAGGGAACTCATGAGAGATCCTGTCGTTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCATAAATGGTTAAGATCAGGAAACCGAACGTGTCCGAGAACTCAGCAAGTTCTTTCGCACACGAACCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTAGGGGAATTGAGTTGCAAGATCGTGTCCGTGTGCATTGTCTTGATGACGATGTGATAACCGAGGCTGATAGAGACCGTTTTCTCACGCTAATAGAGAATATGTCTATGACAATACCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGTATGTTGACGAAGAGAATGCCCTCATTTCGAGCGCTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTGTTCACGCGGATCTGCAAGAGGATGTGATCACAACCCTCTTGAATCTGTCGATCCATGACAACAACAAGAAGCTTGTAGCTGAAACTCCCAATGTAATACCGCTTCTAAAGGAAGCGTTGAGATCAGGAACCATGGAAACGAGGAGCAATGCAGCTGCAGCCCTATTTACTCTGTCAGCTCTCGATTCGAACAAAGCACTCATTGGAAAATCTGGTGCCTTGAAGCCCCTTATCGACCTTTTAGACGAGGGGCATCCTTTATCTATGAAGGATGCTGCTTCAGCCATATTTAATCTTTGTATACTTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATTATGAACCAAATGCATGTTGATGAACTGTTGGCTATTCTTGCAATGCTTTCAAGCAATCAAAAGGCGGTCGAAGAAATCGGAGAGCTGGGAGCTGTCCCTTCCTTATTCAGAATTATCAGGGAAAGTTCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAAGATATGAAGGAGGAGGAGAAATGGTATCGAACTATCTCTGAACTCGCTCAGAATGGAACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGCAGTTAATATGACCCATACCGCGTAA 1377 43.86 MAKTGVFDSDPTVMGKATELKRELQRLIDAIIDDDNCSTDTIDHAKEIISALKELKLRKRSRSSNRYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLRSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVRVHCLDDDVITEADRDRFLTLIENMSMTIPEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSVHADLQEDVITTLLNLSIHDNNKKLVAETPNVIPLLKEALRSGTMETRSNAAAALFTLSALDSNKALIGKSGALKPLIDLLDEGHPLSMKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSNQKAVEEIGELGAVPSLFRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMKEEEKWYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1224494 1227187 - Carg27959-RA Car19g00142 167109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00142 458 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Car19g00142 458 Pfam Armadillo/beta-catenin-like repeat 289 325 IPR000225 GO:0005515
Car19g00142 458 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00944 Car-Chr12:9545365 Car19g00142 Car-Chr19:1224494 1.97E-120 dispersed
Car19g00142 Car-Chr19:1224494 Car01g00541 Car-Chr1:3209827 1.14E-90 dispersed
Car19g00142 Car-Chr19:1224494 Car02g01419 Car-Chr2:9320048 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00142 - - csv:101215688 773.467