Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00157 ATGGAGCGGAACTATCCGTTTGAGAATGGAGTGATGATGACGAGAGACACGAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAACTCGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTACAGAAGTATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAGGAATGAAAGTAGTGGGACTCTGAGCAACTTCATTGGAGTTGAGGAAGATGAGAGAGGGATGAAAATTGCTGAGGCACTAAAATCACATGTTGATGTGCAGAAAACAATACTAGAACAACTAGAGGTACAAAATAAACTACAAATGAGAATAGAAGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTGACCTTGGTAGTCTTGAAAGCACAGGAATGCAGTTATTAGGCTTTGACGTGGCTTTGTCAGATCAAATGGAAAAAAGTAAGAAACAAGAAATGAGAGGAAGCATGACGACTGTAAACGATACTTGTAAGAAGACGGGCGACTCACCCATCGAGATGTGCAAAGTGGAAGCTGGAGAAGAAGACACAAACGAGTTTAATGTTGAAAGGAATATGATCAACTTTGATTTGAATTCAAAAGGTGGCTATGATTACAGTTCGAATGGGGCTGAAGTACTTGAGGCCAATGTGCTTCCTTGTTCGAGGTAA 783 41.89 MERNYPFENGVMMTRDTKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSGTLSNFIGVEEDERGMKIAEALKSHVDVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSDLGSLESTGMQLLGFDVALSDQMEKSKKQEMRGSMTTVNDTCKKTGDSPIEMCKVEAGEEDTNEFNVERNMINFDLNSKGGYDYSSNGAEVLEANVLPCSR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1434362 1439204 - Carg25325-RA Car19g00157 167124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00157 260 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Car19g00157 260 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Car19g00157 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01006 Car-Chr14:8203681 Car19g00157 Car-Chr19:1434362 3.93E-47 dispersed
Car19g00157 Car-Chr19:1434362 Car19g00887 Car-Chr19:9140555 1.38E-49 dispersed
Car19g00157 Car-Chr19:1434362 Car02g01405 Car-Chr2:9240796 3.91E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5247 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00157 - - cmax:111466876 504.982